BMRB Entry 10111
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10111
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Title: Solution structure of the 6th HMG box of mouse UBF1
Deposition date: 2007-02-13 Original release date: 2008-08-29
Authors: Sato, M.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation: Sato, M.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the 6th HMG box of mouse UBF1" Not known ., .-..
Assembly members:
Nucleolar transcription factor 1, polymer, 101 residues, Formula weight is not available
Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: cell free synthesis
Entity Sequences (FASTA):
Nucleolar transcription factor 1: GSSGSSGPKKPPMNGYQKFS
QELLSNGELNHLPLKERMVE
IGSRWQRISQSQKEHYKKLA
EEQQRQYKVHLDLWVKSLSP
QDRAAYKEYISNKRKSGPSS
G
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 452 |
| 15N chemical shifts | 107 |
| 1H chemical shifts | 714 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Nucleolar transcription factor 1 | 1 |
Entities:
Entity 1, Nucleolar transcription factor 1 101 residues - Formula weight is not available
| 1 | GLY | SER | SER | GLY | SER | SER | GLY | PRO | LYS | LYS | ||||
| 2 | PRO | PRO | MET | ASN | GLY | TYR | GLN | LYS | PHE | SER | ||||
| 3 | GLN | GLU | LEU | LEU | SER | ASN | GLY | GLU | LEU | ASN | ||||
| 4 | HIS | LEU | PRO | LEU | LYS | GLU | ARG | MET | VAL | GLU | ||||
| 5 | ILE | GLY | SER | ARG | TRP | GLN | ARG | ILE | SER | GLN | ||||
| 6 | SER | GLN | LYS | GLU | HIS | TYR | LYS | LYS | LEU | ALA | ||||
| 7 | GLU | GLU | GLN | GLN | ARG | GLN | TYR | LYS | VAL | HIS | ||||
| 8 | LEU | ASP | LEU | TRP | VAL | LYS | SER | LEU | SER | PRO | ||||
| 9 | GLN | ASP | ARG | ALA | ALA | TYR | LYS | GLU | TYR | ILE | ||||
| 10 | SER | ASN | LYS | ARG | LYS | SER | GLY | PRO | SER | SER | ||||
| 11 | GLY |
Samples:
sample_1: HMG box domain, [U-13C; U-15N], 1.2 mM; phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 13C-separated NOESY | sample_1 | isotropic | condition_1 |
| 3D 15N-separated NOESY | sample_1 | isotropic | condition_1 |
Software:
xwinnmr v2.6, Bruker - collection
NMRPipe v20020425, Delaglio, F. - processing
NMRView v5.0.4, Johnson, B.A. - data analysis
Kujira v0.816, Kobayashi, N. - data analysis
CYANA v1.0.7, Guntert, P. - refinement, structure solution
NMR spectrometers:
- Bruker AVANCE 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts