BMRB Entry 10280

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PDB ID: 2d9x
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10280
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human

Deposition date: 2008-12-15 Original release date: 2009-12-14

Authors: Li, H.; Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation: Li, H.; Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human" . ., .-..

Assembly members:
PH domain, polymer, 120 residues, Formula weight is not available

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):
PH domain: GSSGSSGENVYGYLMKYTNL VTGWQYRFFVLNNEAGLLEY FVNEQSRNQKPRGTLQLAGA VISPSDEDSHTFTVNAASGE QYKLRATDAKERQHWVSRLQ ICTQHHTEAIGKNNSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	497
15N chemical shifts	123
1H chemical shifts	766

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PH domain	1

Entities:

Entity 1, PH domain 120 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	ASN	VAL
2	TYR	GLY	TYR	LEU	MET	LYS	TYR	THR	ASN	LEU
3	VAL	THR	GLY	TRP	GLN	TYR	ARG	PHE	PHE	VAL
4	LEU	ASN	ASN	GLU	ALA	GLY	LEU	LEU	GLU	TYR
5	PHE	VAL	ASN	GLU	GLN	SER	ARG	ASN	GLN	LYS
6	PRO	ARG	GLY	THR	LEU	GLN	LEU	ALA	GLY	ALA
7	VAL	ILE	SER	PRO	SER	ASP	GLU	ASP	SER	HIS
8	THR	PHE	THR	VAL	ASN	ALA	ALA	SER	GLY	GLU
9	GLN	TYR	LYS	LEU	ARG	ALA	THR	ASP	ALA	LYS
10	GLU	ARG	GLN	HIS	TRP	VAL	SER	ARG	LEU	GLN
11	ILE	CYS	THR	GLN	HIS	HIS	THR	GLU	ALA	ILE
12	GLY	LYS	ASN	ASN	SER	GLY	PRO	SER	SER	GLY

Samples:

sample_1: PH domain, [U-13C; U-15N], 1.16 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2D9X
DBJ	BAF85391 BAG10618
GB	AAH35278 AAH65213 AAI68952 AAK31141 AAL40667
REF	NP_001100560 NP_001179937 NP_073613 NP_789810 XP_001114179
SP	Q8CI95 Q9BXB4
TPG	DAA33462

Biological Magnetic Resonance Data Bank