BMRB Entry 10284

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PDB ID: 2da2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10284
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of the second homeobox domain of AT-binding transcription factor 1 (ATBF1)

Deposition date: 2008-12-17 Original release date: 2009-12-17

Authors: Ohnishi, S.; Kigawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation: Ohnishi, S.; Kigawa, T.; Tochio, N.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the second homeobox domain of AT-binding transcription factor 1 (ATBF1)" . ., .-..

Assembly members:
The second homeobox domain, polymer, 70 residues, Formula weight is not available

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):
The second homeobox domain: GSSGSSGRSSRTRFTDYQLR VLQDFFDANAYPKDDEFEQL SNLLNLPTRVIVVWFQNARQ KARKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	285
15N chemical shifts	67
1H chemical shifts	439

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	The second homeobox domain	1

Entities:

Entity 1, The second homeobox domain 70 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	ARG	SER	SER
2	ARG	THR	ARG	PHE	THR	ASP	TYR	GLN	LEU	ARG
3	VAL	LEU	GLN	ASP	PHE	PHE	ASP	ALA	ASN	ALA
4	TYR	PRO	LYS	ASP	ASP	GLU	PHE	GLU	GLN	LEU
5	SER	ASN	LEU	LEU	ASN	LEU	PRO	THR	ARG	VAL
6	ILE	VAL	VAL	TRP	PHE	GLN	ASN	ALA	ARG	GLN
7	LYS	ALA	ARG	LYS	SER	GLY	PRO	SER	SER	GLY

Samples:

sample_1: The second homeobox domain, [U-13C; U-15N], 1.1 mM; d-TrisHCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz

Biological Magnetic Resonance Data Bank