BMRB Entry 10285

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PDB ID: 2da3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10285
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of the third homeobox domain of AT-binding transcription factor 1 (ATBF1)

Deposition date: 2008-12-17 Original release date: 2009-12-17

Authors: Ohnishi, S.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation: Ohnishi, S.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the third homeobox domain of AT-binding transcription factor 1 (ATBF1)" . ., .-..

Assembly members:
The third homeobox domain, polymer, 80 residues, Formula weight is not available

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):
The third homeobox domain: GSSGSSGGTGGEEPQRDKRL RTTITPEQLEILYQKYLLDS NPTRKMLDHIAHEVGLKKRV VQVWFQNTRARERKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	332
15N chemical shifts	76
1H chemical shifts	531

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	The third homeobox domain	1

Entities:

Entity 1, The third homeobox domain 80 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	GLY	THR	GLY
2	GLY	GLU	GLU	PRO	GLN	ARG	ASP	LYS	ARG	LEU
3	ARG	THR	THR	ILE	THR	PRO	GLU	GLN	LEU	GLU
4	ILE	LEU	TYR	GLN	LYS	TYR	LEU	LEU	ASP	SER
5	ASN	PRO	THR	ARG	LYS	MET	LEU	ASP	HIS	ILE
6	ALA	HIS	GLU	VAL	GLY	LEU	LYS	LYS	ARG	VAL
7	VAL	GLN	VAL	TRP	PHE	GLN	ASN	THR	ARG	ALA
8	ARG	GLU	ARG	LYS	SER	GLY	PRO	SER	SER	GLY

Samples:

sample_1: The third homeobox domain, [U-13C; U-15N], 1.1 mM; d-TrisHCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

Biological Magnetic Resonance Data Bank