BMRB Entry 11219
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11219
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Title: Solution structure of the first SH3 domain of human sorbin and Sh3 domain-containing protein 1
Deposition date: 2010-07-22 Original release date: 2011-07-21
Authors: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.
Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first SH3 domain of human sorbin and Sh3 domain-containing protein 1" . ., .-..
Assembly members:
SH3 domain, polymer, 68 residues, Formula weight is not available
Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free
Entity Sequences (FASTA):
SH3 domain: GSSGSSGRPARAKFDFKAQT
LKELPLQKGDIVYIYKQIDQ
NWYEGEHHGRVGIFPRTYIE
LLSGPSSG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 295 |
| 15N chemical shifts | 63 |
| 1H chemical shifts | 457 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Sorbin and SH3 domain-containing protein 1 | 1 |
Entities:
Entity 1, Sorbin and SH3 domain-containing protein 1 68 residues - Formula weight is not available
| 1 | GLY | SER | SER | GLY | SER | SER | GLY | ARG | PRO | ALA | ||||
| 2 | ARG | ALA | LYS | PHE | ASP | PHE | LYS | ALA | GLN | THR | ||||
| 3 | LEU | LYS | GLU | LEU | PRO | LEU | GLN | LYS | GLY | ASP | ||||
| 4 | ILE | VAL | TYR | ILE | TYR | LYS | GLN | ILE | ASP | GLN | ||||
| 5 | ASN | TRP | TYR | GLU | GLY | GLU | HIS | HIS | GLY | ARG | ||||
| 6 | VAL | GLY | ILE | PHE | PRO | ARG | THR | TYR | ILE | GLU | ||||
| 7 | LEU | LEU | SER | GLY | PRO | SER | SER | GLY |
Samples:
sample_1: SH3 domain, [U-13C; U-15N], 1.00 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 15N-separated NOESY | sample_1 | isotropic | condition_1 |
| 3D 13C-separated NOESY | sample_1 | isotropic | condition_1 |
Software:
VNMR v6.1C, Varian - collection
NMRPipe v20031121, Delaglio, F. - processing
NMRView v5.0.4, Johnson, B.A. - data analysis
Kujira v0.9296, Kobayashi N. - data analysis
CYANA v2.0.17, Guntert, P. - refinement, structure solution
NMR spectrometers:
- Varian INOVA 800 MHz
- Varian INOVA 900 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts