BMRB Entry 15928
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15928
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Title: Human ARNT C-Terminal PAS Domain, 3 Residue IB slip PubMed: 19196990
Deposition date: 2008-08-20 Original release date: 2008-02-13
Authors: Evans, Matthew; Card, Paul; Gardner, Kevin
Citation: Evans, Matthew; Card, Paul; Gardner, Kevin. "ARNT PAS-B has a fragile native state structure with an alternative {beta}-sheet register nearby in sequence space." Proc. Natl. Acad. Sci. U.S.A. 106, 2617-2622 (2009).
Assembly members:
ARNT_PAS-B_Slipped_IB_Strand, polymer, 119 residues, 13799.596 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
ARNT_PAS-B_Slipped_IB_Strand: GAMDNVCQPTEFISRHNIEG
IFTFVDHRCVATVGYQPQEL
LGKNIVEFCHPEDQQLLRDS
FQQVVKLKGQVLSVMFRFRS
KNQEWLWMRTSSQTAQNPYS
DEIETIICTNTNVKNSSQE
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 492 |
| 15N chemical shifts | 122 |
| 1H chemical shifts | 772 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | ARNT_PAS-B_Slipped_IB_Strand | 1 |
Entities:
Entity 1, ARNT_PAS-B_Slipped_IB_Strand 119 residues - 13799.596 Da.
First four residues (GAMD) is a cloning artifact
| 1 | GLY | ALA | MET | ASP | ASN | VAL | CYS | GLN | PRO | THR | ||||
| 2 | GLU | PHE | ILE | SER | ARG | HIS | ASN | ILE | GLU | GLY | ||||
| 3 | ILE | PHE | THR | PHE | VAL | ASP | HIS | ARG | CYS | VAL | ||||
| 4 | ALA | THR | VAL | GLY | TYR | GLN | PRO | GLN | GLU | LEU | ||||
| 5 | LEU | GLY | LYS | ASN | ILE | VAL | GLU | PHE | CYS | HIS | ||||
| 6 | PRO | GLU | ASP | GLN | GLN | LEU | LEU | ARG | ASP | SER | ||||
| 7 | PHE | GLN | GLN | VAL | VAL | LYS | LEU | LYS | GLY | GLN | ||||
| 8 | VAL | LEU | SER | VAL | MET | PHE | ARG | PHE | ARG | SER | ||||
| 9 | LYS | ASN | GLN | GLU | TRP | LEU | TRP | MET | ARG | THR | ||||
| 10 | SER | SER | GLN | THR | ALA | GLN | ASN | PRO | TYR | SER | ||||
| 11 | ASP | GLU | ILE | GLU | THR | ILE | ILE | CYS | THR | ASN | ||||
| 12 | THR | ASN | VAL | LYS | ASN | SER | SER | GLN | GLU |
Samples:
sample_1: ARNT PAS-B Slipped IB Strand, [U-98% 13C; U-98% 15N], 900 uM; TRIS 50 mM; sodium chloride 17 mM; DTT 5 mM; H2O 90%; D2O, [U-100% 2H], 10%
sample_conditions_1: ionic strength: 17 mM; pH: 7.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe v2.3, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView v5.2.2, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking
ARIA v2.1, Linge, O, . - chemical shift assignment, structure solution
CNS v1.2, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution
NMR spectrometers:
- Varian INOVA 600 MHz
- Varian INOVA 800 MHz
Related Database Links:
| PDB |
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