BMRB Entry 16024
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16024
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Title: NMR structrure of gallium subsituted ferredoxin PubMed: 20690702
Deposition date: 2008-11-06 Original release date: 2010-07-27
Authors: Xu, Xingfu; Ubbink, Marcellus; Knaff, David
Citation: Xu, Xingfu; Scanu, Sandra; Chung, Jung-Sung; Hirasawa, Masakazu; Knaff, David; Ubbink, Marcellus. "Structural and functional characterization of the ga-substituted ferredoxin from Synechocystis sp. PCC6803, a mimic of the native protein." Biochemistry 49, 7790-7797 (2010).
Assembly members:
Ferredoxin, polymer, 96 residues, 10237.103 Da.
GA, non-polymer, 69.723 Da.
Natural source: Common Name: Synechocystis sp. PCC 6803 Taxonomy ID: 1148 Superkingdom: Bacteria Kingdom: not available Genus/species: Synechocystis Synechocystis sp. PCC 6803
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
Ferredoxin: ASYTVKLITPDGESSIECSD
DTYILDAAEEAGLDLPYSCR
AGACSTCAGKITAGSVDQSD
QSFLDDDQIEAGYVLTCVAY
PTSDCTIETHKEEDLY
- assigned_chemical_shifts
| Data type | Count |
| 15N chemical shifts | 96 |
| 1H chemical shifts | 598 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Ferredoxin | 1 |
| 2 | GALLIUM (III) ION | 2 |
Entities:
Entity 1, Ferredoxin 96 residues - 10237.103 Da.
| 1 | ALA | SER | TYR | THR | VAL | LYS | LEU | ILE | THR | PRO | ||||
| 2 | ASP | GLY | GLU | SER | SER | ILE | GLU | CYS | SER | ASP | ||||
| 3 | ASP | THR | TYR | ILE | LEU | ASP | ALA | ALA | GLU | GLU | ||||
| 4 | ALA | GLY | LEU | ASP | LEU | PRO | TYR | SER | CYS | ARG | ||||
| 5 | ALA | GLY | ALA | CYS | SER | THR | CYS | ALA | GLY | LYS | ||||
| 6 | ILE | THR | ALA | GLY | SER | VAL | ASP | GLN | SER | ASP | ||||
| 7 | GLN | SER | PHE | LEU | ASP | ASP | ASP | GLN | ILE | GLU | ||||
| 8 | ALA | GLY | TYR | VAL | LEU | THR | CYS | VAL | ALA | TYR | ||||
| 9 | PRO | THR | SER | ASP | CYS | THR | ILE | GLU | THR | HIS | ||||
| 10 | LYS | GLU | GLU | ASP | LEU | TYR |
Entity 2, GALLIUM (III) ION - Ga - 69.723 Da.
| 1 | GA |
Samples:
sample_1: GaFd, [U-99% 15N], 1 mM; sodium phosphate 50 mM
sample-2: GaFd 2 mM; sodium phosphate 50 mM
sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 293 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample-2 | isotropic | sample_conditions_1 |
| 2D 1H-1H TOCSY | sample-2 | isotropic | sample_conditions_1 |
Software:
CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution
AZARA, Boucher - processing
ANSIG, Kraulis - data analysis
NMR spectrometers:
- Bruker DMX 600 MHz
- Bruker DMX 900 MHz
Related Database Links:
| PDB | |
| DBJ | BAA10197 BAA24020 BAK50980 BAL29978 BAL33147 |
| GB | AAB22616 AAB72025 AGF52490 AIE72625 ALJ68421 |
| PRF | 0812212A |
| REF | WP_010873424 WP_028946897 |
| SP | P00243 P27320 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts