BMRB Entry 16545
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16545
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Title: Solution NMR structure of protein CV0237 from Chromobacterium violaceum. Northeast Structural Genomics Consortium (NESG) target CvT1.
Deposition date: 2009-10-07 Original release date: 2010-11-10
Authors: Fares, Christophe; Lemak, Alexander; Yee, Adelinda; Garcia, Maite; Arrowsmith, Cheryl
Citation: Fares, Christophe; Lemak, Alexander; Yee, Adelinda; Garcia, Maite; Arrowsmith, Cheryl. "Solution structure of protein CV0237 from Chromobacterium violaceum" The BMRB entry is the only known published source for the data..
Assembly members:
CV0237, polymer, 82 residues, 8624.769 Da.
Natural source: Common Name: C. violaceum Taxonomy ID: 536 Superkingdom: Bacteria Kingdom: not available Genus/species: Chromobacterium violaceum
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
CV0237: QGHMDTSNHLLPGLFRQLGL
EDEPAAIRAFIDSHPLPPRV
PLPEAPFWTPAQAAFLRQAL
ECDAEWSEAADGLAVLLQQG
EA
- assigned_chemical_shifts
- spectral_peak_list
| Data type | Count |
| 13C chemical shifts | 306 |
| 15N chemical shifts | 64 |
| 1H chemical shifts | 499 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | CV0237 | 1 |
Entities:
Entity 1, CV0237 82 residues - 8624.769 Da.
| 1 | GLN | GLY | HIS | MET | ASP | THR | SER | ASN | HIS | LEU | ||||
| 2 | LEU | PRO | GLY | LEU | PHE | ARG | GLN | LEU | GLY | LEU | ||||
| 3 | GLU | ASP | GLU | PRO | ALA | ALA | ILE | ARG | ALA | PHE | ||||
| 4 | ILE | ASP | SER | HIS | PRO | LEU | PRO | PRO | ARG | VAL | ||||
| 5 | PRO | LEU | PRO | GLU | ALA | PRO | PHE | TRP | THR | PRO | ||||
| 6 | ALA | GLN | ALA | ALA | PHE | LEU | ARG | GLN | ALA | LEU | ||||
| 7 | GLU | CYS | ASP | ALA | GLU | TRP | SER | GLU | ALA | ALA | ||||
| 8 | ASP | GLY | LEU | ALA | VAL | LEU | LEU | GLN | GLN | GLY | ||||
| 9 | GLU | ALA |
Samples:
sample_1: CV0237, [U-99% 13C; U-99% 15N], 0.4 – 0.7 mM; TRIS, [U-99% 2H], 10 mM; sodium chloride 300 mM; DTT, [U-99% 2H], 10 mM; sodium azide 0.01%; Zinc Sulfate 10 uM; Roche inhibitor cocktail 1 x; H20 90%; D20 10%
sample_conditions_1: ionic strength: 300 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY (aliph) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY (HCH,aliph) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY (CCH,aliph) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY (arom) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY (HCH.arom) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY (CCH,arom) (with NUS) | sample_1 | isotropic | sample_conditions_1 |
| 2D HBCBCGCDHD | sample_1 | isotropic | sample_conditions_1 |
| 2D HBCBCGCDCEHE | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
SPARKY, Goddard - peak picking
MDDNMR, Vlad Orekhov - processing (multidimensional decomposition)
ABACUS, Alexander Lemak - chemical shift assignment
TALOS, Cornilescu, Delaglio and Bax - data analysis
CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement
TOPSPIN, Bruker Biospin - collection
NMR spectrometers:
- Bruker Avance 500 MHz
- Bruker Avance 600 MHz
- Bruker Avance 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts