BMRB Entry 17421

Name: Solution structure of human protein C6orf130 in complex with ADP-ribose
Published: 2011-03-08

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PDB ID: 2l8r
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR17421
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of human protein C6orf130 in complex with ADP-ribose

Deposition date: 2011-01-22 Original release date: 2011-03-08

Authors: Lytle, B.; Peterson, F.; Volkman, B.

Citation: Lytle, B.; Peterson, F.; Volkman, B.. "Solution structure of human C6orf130, a putative macro domain." To be published ., .-..

Assembly members:
C6orf130, polymer, 151 residues, 16904.613 Da.
APR, non-polymer, 559.316 Da.

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: obtained from a vendor Host organism: Escherichia coli

Entity Sequences (FASTA):
C6orf130: GSSLNEDPEGSRITYVKGDL FACPKTDSLAHCISEDCRMG AGIAVLFKKKFGGVQELLNQ QKKSGEVAVLKRDGRYIYYL ITKKRASHKPTYENLQKSLE AMKSHCLKNGVTDLSMPRIG CGLDRLQWENVSAMIEEVFE ATDIKITVYTL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	649
15N chemical shifts	161
1H chemical shifts	1044

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C6orf130	1
2	ADENOSINE-5-DIPHOSPHORIBOSE	2

Entities:

Entity 1, C6orf130 151 residues - 16904.613 Da.

The N-terminal glycine is a cloning artifact.

1

GLY

SER

LEU

ASN

GLU

ASP

PRO

GLU

GLY

2

SER

ARG

ILE

THR

TYR

VAL

LYS

GLY

ASP

LEU

3

PHE

ALA

CYS

PRO

LYS

THR

ASP

SER

LEU

ALA

4

HIS

CYS

ILE

SER

GLU

ASP

CYS

ARG

MET

GLY

5

ALA

GLY

ILE

ALA

VAL

LEU

PHE

LYS

6

PHE

GLY

VAL

GLN

GLU

LEU

ASN

GLN

7

GLN

LYS

SER

GLY

GLU

VAL

ALA

VAL

LEU

8

LYS

ARG

ASP

GLY

ARG

TYR

ILE

TYR

LEU

9

ILE

THR

LYS

ARG

ALA

SER

HIS

LYS

PRO

10

THR

TYR

GLU

ASN

LEU

GLN

LYS

SER

LEU

GLU

11

ALA

MET

LYS

SER

HIS

CYS

LEU

LYS

ASN

GLY

12

VAL

THR

ASP

LEU

SER

MET

PRO

ARG

ILE

GLY

13

CYS

GLY

LEU

ASP

ARG

LEU

GLN

TRP

GLU

ASN

14

VAL

SER

ALA

MET

ILE

GLU

VAL

PHE

GLU

15

ALA

THR

ASP

ILE

LYS

ILE

THR

VAL

TYR

THR

16

LEU

Entity 2, ADENOSINE-5-DIPHOSPHORIBOSE - C15 H23 N5 O14 P2 - 559.316 Da.

1

APR

Samples:

sample: C6orf130, [U-100% 13C; U-100% 15N], 0.75 mM; ADP-ribose 1.875 mM; BisTris 20 mM; NaCl 200 mM; DTT 2 mM; H2O 93%; D2O 7%

sample_conditions_1: ionic strength: 200 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample	isotropic	sample_conditions_1
3D F1-13C-flitered/F3-13C-edited 1H-13C NOESY aliphatic	sample	isotropic	sample_conditions_1

Software:

X-PLOR NIH v2.9.3, SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. - refinement

TOPSPIN v2.1, Bruker - collection

NMRPipe v2007, Delagio,F. et al. - processing

XEASY v1.3, Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. - data analysis

GARANT v2.1, C. Bartels - data analysis

CYANA v2.1, Guntert, P. - structural calculation

NMR spectrometers:

Bruker Avance II 600 MHz

BMRB	10164 15593
PDB	2EEE 2L8R 2LGR 4J5Q 4J5R 4J5S
DBJ	BAF83628 BAG36161
GB	AAH11709 AIC53444 AIC58012 EAX04010 EAX04011
REF	NP_001181654 NP_659500 XP_001117219 XP_001117235 XP_001174030
SP	Q9Y530

Biological Magnetic Resonance Data Bank