BMRB Entry 17580
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17580
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Title: Myc G-quadruplex formed at the 5'-end of NHEIII element PubMed: 21795379
Deposition date: 2011-04-07 Original release date: 2012-02-10
Authors: Mathad, Raveendra; Hatzakis, Emmanuel; Yang, Danzhou
Citation: Mathad, Raveendra; Hatzakis, Emmanuel; Dai, Jixun; Yang, Danzhou. "c-MYC promoter G-quadruplex formed at the 5'-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability." Nucleic Acids Res. 39, 9023-9033 (2011).
Assembly members:
DNA_G-quadruplex, polymer, 19 residues, 510.438 Da.
Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis Host organism: Escherichia coli
Entity Sequences (FASTA):
DNA_G-quadruplex: TAGGGAGGGTAGGGAGGGT
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 161 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Myc G-quadruplex | 1 |
Entities:
Entity 1, Myc G-quadruplex 19 residues - 510.438 Da.
| 1 | DT | DA | DG | DG | DG | DA | DG | DG | DG | DT | ||||
| 2 | DA | DG | DG | DG | DA | DG | DG | DG | DT |
Samples:
sample_1: DNA G-quadruplex 1 mM; H20 90%; D2O 10%%
sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
X-PLOR NIH, Brunger - refinement
NMR spectrometers:
- Bruker Avance 600 MHz