BMRB Entry 17923
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17923
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Title: 3D solution structure of plant defensin Lc-def
Deposition date: 2011-09-07 Original release date: 2012-09-05
Authors: Shenkarev, Zakhar; Mineev, Konstantin; Gizatullina, Albina
Citation: Shenkarev, Zakhar; Mineev, Konstantin; Gizatullina, Albina; Finkina, Ekaterina; Arseniev, Alexander; Ovchinnikova, Tatyana. "Solution structure of defensin Lc-def from germinated lentil (Lens Culinaris) seeds" Biochemistry ., .-..
Assembly members:
entity, polymer, 47 residues, 5460.254 Da.
Natural source: Common Name: lentil Taxonomy ID: 3864 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Lens culinaris
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: KTCENLSDSFKGPCIPDGNC
NKHCKEKEHLLSGRCRDDFR
CWCTRNC
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 54 |
| 15N chemical shifts | 45 |
| 1H chemical shifts | 286 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | defensin Lc-def from germinated lentil seeds | 1 |
Entities:
Entity 1, defensin Lc-def from germinated lentil seeds 47 residues - 5460.254 Da.
| 1 | LYS | THR | CYS | GLU | ASN | LEU | SER | ASP | SER | PHE | ||||
| 2 | LYS | GLY | PRO | CYS | ILE | PRO | ASP | GLY | ASN | CYS | ||||
| 3 | ASN | LYS | HIS | CYS | LYS | GLU | LYS | GLU | HIS | LEU | ||||
| 4 | LEU | SER | GLY | ARG | CYS | ARG | ASP | ASP | PHE | ARG | ||||
| 5 | CYS | TRP | CYS | THR | ARG | ASN | CYS |
Samples:
sample_1: Lc-def 1 mM
sample_2: Lc-def, [U-100% 15N], 0.5 mM
sample_conditions_1: ionic strength: 0 M; pH: 5.0; pressure: 1 atm; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D DQF-COSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNHA | sample_2 | isotropic | sample_conditions_1 |
| 3D HNHB | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-15N TOCSY | sample_2 | isotropic | sample_conditions_1 |
Software:
XEASY, Keller and Wuthrich - chemical shift assignment, peak picking
CYANA, Guntert, Mumenthaler and Wuthrich - data analysis, structure solution
NMR spectrometers:
- Bruker Avance 600 MHz
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SPARKY: Backbone
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