BMRB Entry 17970
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR17970
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Title: Solution structure and binding studies of the RanBP2-type zinc finger of RBM5 PubMed: 22162216
Deposition date: 2011-09-30 Original release date: 2012-01-05
Authors: Farina, Biancamaria; Pellecchia, Maurizio
Citation: Farina, Biancamaria; Fattorusso, Roberto; Pellecchia, Maurizio. "Targeting Zinc Finger Domains with Small Molecules: Solution Structure and Binding Studies of the RanBP2-Type Zinc Finger of RBM5" ChemBioChem 12, 2837-2845 (2011).
Assembly members:
RBM5-ZF1, polymer, 32 residues, 3734.461 Da.
AQN, non-polymer, 288.275 Da.
ZN, non-polymer, 65.409 Da.
Natural source: Common Name: Homo sapiens Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
RBM5-ZF1: XKFEDWLCNKCCLNNFRKRL
KCFRCGADKFDX
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 214 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | RBM5-ZF1 | 1 |
| 2 | AQN | 2 |
| 3 | ZINC ION | 3 |
Entities:
Entity 1, RBM5-ZF1 32 residues - 3734.461 Da.
| 1 | ACE | LYS | PHE | GLU | ASP | TRP | LEU | CYS | ASN | LYS | ||||
| 2 | CYS | CYS | LEU | ASN | ASN | PHE | ARG | LYS | ARG | LEU | ||||
| 3 | LYS | CYS | PHE | ARG | CYS | GLY | ALA | ASP | LYS | PHE | ||||
| 4 | ASP | NH2 |
Entity 2, AQN - C14 H8 O5 S - 288.275 Da.
| 1 | AQN |
Entity 3, ZINC ION - Zn - 65.409 Da.
| 1 | ZN |
Samples:
sample_1: RBM5-ZF1 100 uM; ZINC ION 150 uM; AQN 500 uM; H2O 90%; D2O 10%
sample_conditions_1: ionic strength: 0 M; pH: 5.7; pressure: 1 atm; temperature: 293 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D DQF-COSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN vv2.1, Bruker Biospin - collection, data analysis
CARA vv1.5,v1.8, Keller and Wuthrich - chemical shift assignment, peak picking
CYANA vv2.1, Guntert, Mumenthaler and Wuthrich - refinement, structure solution
SYBYL, Tripos - Energy Minimization, refinement
NMR spectrometers:
- Bruker Avance 700 MHz