BMRB Entry 18167
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18167
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Title: Solution Structure of Cyanobacterial PsbP (CyanoP) from Synechocystis sp. PCC 6803 PubMed: 22414666
Deposition date: 2011-12-28 Original release date: 2012-03-23
Authors: Jackson, Simon; Hinds, Mark; Eaton-Rye, Julian
Citation: Jackson, Simon; Hinds, Mark; Eaton-Rye, Julian. "Solution structure of CyanoP from Synechocystis sp. PCC 6803: new insights on the structural basis for functional specialization amongst PsbP family proteins." Biochim. Biophys. Acta 1817, 1331-1338 (2012).
Assembly members:
entity, polymer, 170 residues, 18744.742 Da.
Natural source: Common Name: Synechocystis sp. Taxonomy ID: 1143 Superkingdom: Bacteria Kingdom: not available Genus/species: Synechocystis sp.
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: GPLGSCGGVGIASLQRYSDT
KDGYEFLYPNGWIGVDVKGA
SPGVDVVFRDLIERDENLSV
IISEIPSDKTLTDLGTATDV
GYRFMKTVNDASQGDRQAEL
INAEARDEDGQVYYTLEYRV
LVGDNVERHDLASVTTNRGK
LITFDLSTAEDRWDTVKSLF
DTVASSFHVY
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 647 |
15N chemical shifts | 177 |
1H chemical shifts | 1112 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | PsbP | 1 |
Entities:
Entity 1, PsbP 170 residues - 18744.742 Da.
There are 5 N-terminal vector derived residues (GPLGS). The sequence represents the enzymatically processed PsbP.
1 | GLY | PRO | LEU | GLY | SER | CYS | GLY | GLY | VAL | GLY | |
2 | ILE | ALA | SER | LEU | GLN | ARG | TYR | SER | ASP | THR | |
3 | LYS | ASP | GLY | TYR | GLU | PHE | LEU | TYR | PRO | ASN | |
4 | GLY | TRP | ILE | GLY | VAL | ASP | VAL | LYS | GLY | ALA | |
5 | SER | PRO | GLY | VAL | ASP | VAL | VAL | PHE | ARG | ASP | |
6 | LEU | ILE | GLU | ARG | ASP | GLU | ASN | LEU | SER | VAL | |
7 | ILE | ILE | SER | GLU | ILE | PRO | SER | ASP | LYS | THR | |
8 | LEU | THR | ASP | LEU | GLY | THR | ALA | THR | ASP | VAL | |
9 | GLY | TYR | ARG | PHE | MET | LYS | THR | VAL | ASN | ASP | |
10 | ALA | SER | GLN | GLY | ASP | ARG | GLN | ALA | GLU | LEU | |
11 | ILE | ASN | ALA | GLU | ALA | ARG | ASP | GLU | ASP | GLY | |
12 | GLN | VAL | TYR | TYR | THR | LEU | GLU | TYR | ARG | VAL | |
13 | LEU | VAL | GLY | ASP | ASN | VAL | GLU | ARG | HIS | ASP | |
14 | LEU | ALA | SER | VAL | THR | THR | ASN | ARG | GLY | LYS | |
15 | LEU | ILE | THR | PHE | ASP | LEU | SER | THR | ALA | GLU | |
16 | ASP | ARG | TRP | ASP | THR | VAL | LYS | SER | LEU | PHE | |
17 | ASP | THR | VAL | ALA | SER | SER | PHE | HIS | VAL | TYR |
Samples:
sample_1: PsbP, [U-100% 15N], 0.4 mM; TCEP 5 mM; sodium phosphate 25 mM; sodium chloride 10 mM; H2O 95%; D2O 5%
sample_2: PsbP, [U-100% 13C; U-100% 15N], 0.4 mM; TCEP 5 mM; sodium phosphate 25 mM; sodium chloride 10 mM; H2O 95%; D2O 5%
sample_conditions_1: pH: 6.7; pressure: 1 atm; temperature: 298.15 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
3D 1H-13C NOESY | sample_2 | isotropic | sample_conditions_1 |
3D HNCA | sample_2 | isotropic | sample_conditions_1 |
3D HNCACB | sample_2 | isotropic | sample_conditions_1 |
3D HNCO | sample_2 | isotropic | sample_conditions_1 |
3D HN(CO)CA | sample_2 | isotropic | sample_conditions_1 |
3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_1 |
3D HBHA(CO)NH | sample_2 | isotropic | sample_conditions_1 |
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN v2, Bruker Biospin - collection, processing
ANALYSIS, CCPN - data analysis
CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution
TALOS, Cornilescu, Delaglio and Bax - data analysis
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement
NMR spectrometers:
- Bruker Avance 800 MHz
- Bruker Avance 600 MHz
Related Database Links:
PDB | |
DBJ | BAA18019 BAK50191 BAL29190 BAL32359 BAL35528 |
GB | AGF51707 ALJ67700 |
REF | WP_010872644 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts