BMRB Entry 18182
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18182
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Title: Identification and structural basis for a novel interaction between Vav2 and Arap3 PubMed: 22750419
Deposition date: 2012-01-05 Original release date: 2012-11-19
Authors: Wu, Bo; Zhang, Jiahai; Wu, Jihui; Shi, Yunyu
Citation: Wu, Bo; Wang, Fengsong; Zhang, Jiahai; Zhang, Zhiyong; Qin, Liying; Peng, Junhui; Li, Fudong; Liu, Jianping; Lu, Guowei; Gong, Qingguo; Yao, Xuebiao; Wu, Jihui; Shi, Yunyu. "Identification and structural basis for a novel interaction between Vav2 and Arap3" J. Struct. Biol. 180, 84-95 (2012).
Assembly members:
entity_1, polymer, 113 residues, 13480.319 Da.
entity_2, polymer, 9 residues, 1130.064 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: SRPPSREIDYTAYPWFAGNM
ERQQTDNLLKSHASGTYLIR
ERPAEAERFAISIKFNDEVK
HIKVVEKDNWIHITEAKKFD
SLLELVEYYQCHSLKESFKQ
LDTTLKYPYKSRE
entity_2: EEPVXEEVG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 455 |
| 15N chemical shifts | 111 |
| 1H chemical shifts | 884 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Vav2 | 1 |
| 2 | Arap3 | 2 |
Entities:
Entity 1, Vav2 113 residues - 13480.319 Da.
| 1 | SER | ARG | PRO | PRO | SER | ARG | GLU | ILE | ASP | TYR | ||||
| 2 | THR | ALA | TYR | PRO | TRP | PHE | ALA | GLY | ASN | MET | ||||
| 3 | GLU | ARG | GLN | GLN | THR | ASP | ASN | LEU | LEU | LYS | ||||
| 4 | SER | HIS | ALA | SER | GLY | THR | TYR | LEU | ILE | ARG | ||||
| 5 | GLU | ARG | PRO | ALA | GLU | ALA | GLU | ARG | PHE | ALA | ||||
| 6 | ILE | SER | ILE | LYS | PHE | ASN | ASP | GLU | VAL | LYS | ||||
| 7 | HIS | ILE | LYS | VAL | VAL | GLU | LYS | ASP | ASN | TRP | ||||
| 8 | ILE | HIS | ILE | THR | GLU | ALA | LYS | LYS | PHE | ASP | ||||
| 9 | SER | LEU | LEU | GLU | LEU | VAL | GLU | TYR | TYR | GLN | ||||
| 10 | CYS | HIS | SER | LEU | LYS | GLU | SER | PHE | LYS | GLN | ||||
| 11 | LEU | ASP | THR | THR | LEU | LYS | TYR | PRO | TYR | LYS | ||||
| 12 | SER | ARG | GLU |
Entity 2, Arap3 9 residues - 1130.064 Da.
| 1 | GLU | GLU | PRO | VAL | PTR | GLU | GLU | VAL | GLY |
Samples:
sample_1: entity_1, [U-100% 13C; U-100% 15N], 1 mM; entity_2 3 mM; potassium phosphate 5 mM; sodium phosphate 20 mM; DTT 5 mM; EDTA 2 mM; sodium chloride 75 mM; H2O 90%; D2O 10%
sample_2: entity_1, [U-100% 13C; U-100% 15N], 1 mM; entity_2 3 mM; potassium phosphate 5 mM; sodium chloride 75 mM; DTT 5 mM; EDTA 2 mM; sodium phosphate 20 mM; D2O 100%
sample_conditions_1: ionic strength: 100 mM; pH: 6.2; pressure: 1 atm; temperature: 298 K
sample_conditions_2: ionic strength: 100 mM; pH: 6.2; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HCACO | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D C(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_2 |
| 3D HCCH-COSY | sample_2 | isotropic | sample_conditions_2 |
| 3D 1H-13C NOESY | sample_2 | isotropic | sample_conditions_2 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
SPARKY, Goddard - chemical shift assignment
CNS, Brunger, Adams, Clore, Gros, Nilges and Read - chemical shift calculation
NMR spectrometers:
- Bruker DMX 600 MHz
Related Database Links:
| BMRB | 18183 |
| PDB | |
| DBJ | BAJ17841 |
| EMBL | CAE45861 CAH89854 |
| GB | AAB34377 AAH33187 AAI32966 AAI32968 EAW88108 |
| REF | NP_001124861 NP_001127870 NP_001252562 NP_003362 XP_003911174 |
| SP | P52735 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts