BMRB Entry 18713
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18713
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Title: The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant
Deposition date: 2012-09-13 Original release date: 2012-12-10
Authors: Hong, Jingjun; Feng, Hanqiao; Zhou, Zheng; Ghirlando, Rodolfo; Bai, Yawen
Citation: Hong, Jingjun; Feng, Hanqiao; Zhou, Zheng; Ghirlando, Rodolfo; Bai, Yawen. "The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the" J. Mol. Biol. ., .-..
Assembly members:
sC4, polymer, 121 residues, 13718.007 Da.
Natural source: Common Name: Baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
sC4: LISKIPFARLVKEVTDEFTT
KDQDLRWQSMAIMALQEASE
AYLVGLLEHTNLLALHLVPR
GSKRISGLIYEEVRAVLKSF
LESVIRDSVTYTEHAKRKTV
TSLDVVYALKRQGRTLYGFG
G
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 487 |
| 15N chemical shifts | 116 |
| 1H chemical shifts | 843 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | sC4 | 1 |
Entities:
Entity 1, sC4 121 residues - 13718.007 Da.
The segment LVPRGS (L57-S62 in the sequence) is a thrombin cutting site.
| 1 | LEU | ILE | SER | LYS | ILE | PRO | PHE | ALA | ARG | LEU | ||||
| 2 | VAL | LYS | GLU | VAL | THR | ASP | GLU | PHE | THR | THR | ||||
| 3 | LYS | ASP | GLN | ASP | LEU | ARG | TRP | GLN | SER | MET | ||||
| 4 | ALA | ILE | MET | ALA | LEU | GLN | GLU | ALA | SER | GLU | ||||
| 5 | ALA | TYR | LEU | VAL | GLY | LEU | LEU | GLU | HIS | THR | ||||
| 6 | ASN | LEU | LEU | ALA | LEU | HIS | LEU | VAL | PRO | ARG | ||||
| 7 | GLY | SER | LYS | ARG | ILE | SER | GLY | LEU | ILE | TYR | ||||
| 8 | GLU | GLU | VAL | ARG | ALA | VAL | LEU | LYS | SER | PHE | ||||
| 9 | LEU | GLU | SER | VAL | ILE | ARG | ASP | SER | VAL | THR | ||||
| 10 | TYR | THR | GLU | HIS | ALA | LYS | ARG | LYS | THR | VAL | ||||
| 11 | THR | SER | LEU | ASP | VAL | VAL | TYR | ALA | LEU | LYS | ||||
| 12 | ARG | GLN | GLY | ARG | THR | LEU | TYR | GLY | PHE | GLY | ||||
| 13 | GLY |
Samples:
sample_1: sC4, [U-100% 15N], 0.8 ± 0.05 mM; sC4, [U-100% 13C; U-100% 15N], 0.8 ± 0.05 mM; sC4, [U-13C; U-15N; U-2H], 0.8 ± 0.05 mM; sC4, [U-13C; U-15N; U-2H], 0.8 ± 0.05 mM; H2O 90 ± 0.05 %; D2O 10 ± 0.05 %
sample_2: sC4, [U-100% 13C; U-100% 15N], 0.8 ± 0.05 mM; D2O 100 ± 0.05 %
sample_3: sC4 0.8 ± 0.05 mM; D2O 100 ± 0.05 %
sample_conditions_1: pH: 5.4; pressure: 1 atm; temperature: 308.1 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_3 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_2 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_2 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_3 | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | sample_2 | isotropic | sample_conditions_1 |
Software:
NMRPipe vupdated, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView vupdated, Johnson, One Moon Scientific - chemical shift assignment
X-PLOR NIH vupdated, Schwieters, Kuszewski, Tjandra and Clore - structure solution
NMRDraw, Cornilescu, Delaglio and Bax - data analysis
ProcheckNMR vupdated, Laskowski and MacArthur - structure solution
Molmol, Koradi, Billeter and Wuthrich - structure solution
NMR spectrometers:
- Bruker Avance 500 MHz
- Bruker Avance 700 MHz
- Bruker Avance 900 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts