BMRB Entry 18869
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18869
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Title: Solution NMR Structure of Cyclin-dependent kinase 2-associated protein 2 (CDK2AP2, DOC-1R) from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8910C
Deposition date: 2012-11-30 Original release date: 2013-01-24
Authors: Ertekin, Asli; Janjua, Haleema; Kohan, Eitan; Shastry, Ritu; Pederson, Kari; Prestegard, James; Montelione, Gaetano
Citation: Ertekin, Asli; Janjua, Haleema; Shastry, Ritu; Pederson, Kari; Prestegard, James; Montelione, Gaetano. "Solution NMR Structure of CDK2-associated protein 2 (CDK2AP2; Deleted in Oral Cancer 1 Related protein, DOC-1R)" Not known ., .-..
Assembly members:
HR8910C, polymer, 69 residues, 7644.846 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
HR8910C: SHMAMKPPGAQGSQSTYTDL
LSVIEEMGKEIRPTYAGSKS
AMERLKRGIIHARALVRECL
AETERNART
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 283 |
15N chemical shifts | 65 |
1H chemical shifts | 435 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | HR8910C_1 | 1 |
2 | HR8910C_2 | 1 |
Entities:
Entity 1, HR8910C_1 69 residues - 7644.846 Da.
Protein is a dimer, residues 58-60 are part of N-terminal tag.
1 | SER | HIS | MET | ALA | MET | LYS | PRO | PRO | GLY | ALA | ||||
2 | GLN | GLY | SER | GLN | SER | THR | TYR | THR | ASP | LEU | ||||
3 | LEU | SER | VAL | ILE | GLU | GLU | MET | GLY | LYS | GLU | ||||
4 | ILE | ARG | PRO | THR | TYR | ALA | GLY | SER | LYS | SER | ||||
5 | ALA | MET | GLU | ARG | LEU | LYS | ARG | GLY | ILE | ILE | ||||
6 | HIS | ALA | ARG | ALA | LEU | VAL | ARG | GLU | CYS | LEU | ||||
7 | ALA | GLU | THR | GLU | ARG | ASN | ALA | ARG | THR |
Samples:
sample_4: HR8910C.005, [U-5% 13C; U-100% 15N], 5.0 mg/mL; Proteinase Inhibitors 1 x; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 200 mM; MES pH 6.5 20 mM; D2O 5%
sample_1: HR8910C.003, [U-100% 13C; U-100% 15N], 5.0 mg/mL; Proteinase Inhibitors 1 x; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 200 mM; MES pH 6.5 20 mM; D2O 5%
sample_2: HR8910C, [U-100% 13C; U-100% 15N], 5.0 mg/mL; HR8910C 15.0 mg/mL; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 200 mM; MES pH 6.5 20 mM; D2O 5%; Proteinase Inhibitors 1 x
sample_3: HR8910C, [U-100% 15N], 0.3 mM; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 200 mM; MES pH 6.5 20 mM; D2O 5%; Proteinase Inhibitors 1 x; PEG 4.2%
sample_conditions_1: pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY aliphatic | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 13C-filtered NOESY aliphatic | sample_2 | isotropic | sample_conditions_1 |
2D 13C-filtered NOESY aromatic | sample_2 | isotropic | sample_conditions_1 |
2D 1H-13C high res (L/V methyl stereospecific assignment) | sample_4 | isotropic | sample_conditions_1 |
3D HC(C)H-TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D HC(C)H-COSY | sample_1 | isotropic | sample_conditions_1 |
3D (H)CCH-TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY aromatic | sample_1 | isotropic | sample_conditions_1 |
Software:
CNS v1.3, Brunger, Adams, Clore, Gros, Nilges and Read - refinement,structure solution,geometry optimization
CYANA v3.02, Guntert, Mumenthaler and Wuthrich - refinement,geometry optimization,structure solution
AutoAssign v2.1, Zimmerman, Moseley, Kulikowski and Montelione - data analysis,chemical shift assignment
NMRPipe v2.0, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
TOPSPIN v2.1, Bruker Biospin - collection
PINE v1.0, Bahrami, Markley, Assadi, and Eghbalnia - chemical shift assignment
SPARKY v3.112, Goddard - data analysis
TALOS+, Shen, Cornilescu, Delaglio and Bax - geometry optimization
PALES, PALES (Zweckstetter, Bax) - geometry optimization
PSVS v1.4, Bhattacharya, Montelione - structure validation
NMR spectrometers:
- Bruker Avance 800 MHz
Related Database Links:
UNP | O75956 |
PDB | |
DBJ | BAB22939 BAB28046 BAB31046 BAG50926 |
EMBL | CAG33331 CAG46839 |
GB | AAC61745 AAH02850 AAH16704 AAH25656 AAP35555 |
REF | NP_001030397 NP_001102968 NP_001253515 NP_001258778 NP_005842 |
SP | O75956 Q58CN7 Q9CPY4 |
TPG | DAA13560 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts