BMRB Entry 19017
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19017
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Title: Solution structure of an intramolecular propeller-type G-quadruplex containing a single bulge PubMed: 23521617
Deposition date: 2013-02-08 Original release date: 2013-05-30
Authors: Thachappilly Mukundan, Vineeth
Citation: Mukundan, Vineeth Thachappilly; Phan, Anh Tuan. "Bulges in g-quadruplexes: broadening the definition of g-quadruplex-forming sequences." J. Am. Chem. Soc. 135, 5017-5028 (2013).
Assembly members:
DNA_1, polymer, 19 residues, 6034.914 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
DNA_1: TTGTGGTGGGTGGGTGGGT
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 183 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | DNA_1 | 1 |
Entities:
Entity 1, DNA_1 19 residues - 6034.914 Da.
| 1 | DT | DT | DG | DT | DG | DG | DT | DG | DG | DG | ||||
| 2 | DT | DG | DG | DG | DT | DG | DG | DG | DT |
Samples:
sample_1: DNA_10.1 – 2.0 mM; H2O 90%; D2O 10%; Potassium Ion 60 mM
sample_conditions_1: ionic strength: 0.05 M; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C JR-HMBC | sample_1 | isotropic | sample_conditions_1 |
Software:
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - geometry optimization, refinement
NMR spectrometers:
- Bruker Avance 600 MHz