BMRB Entry 19311
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19311
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Title: Chemical shifts and structural restraints for Saccharomyces cerevisiae Est3 protein PubMed: 24344315
Deposition date: 2013-06-21 Original release date: 2013-12-16
Authors: Rao, Timsi; Armstrong, Geoffrey; Wuttke, Deborah
Citation: Rao, Timsi; Lubin, Johnathan; Armstrong, Geoffrey; Tucey, Timothy; Lundblad, Victoria; Wuttke, Deborah. "Structure of Est3 reveals a bimodal surface with differential roles in telomere replication." Proc. Natl. Acad. Sci. U.S.A. 111, 214-218 (2014).
Assembly members:
entity, polymer, 170 residues, 19297.996 Da.
Natural source: Common Name: baker Taxonomy ID: 4932 Superkingdom: not available Kingdom: not available Genus/species: Eukaryota Fungi
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: STDSVFLQPWIKALIEDNSE
HDQYHPSGHVIPSLTKQDLA
LPHMSPTILTNPCHFAKITK
FYNVCDYKVYASIRDSSHQI
LVEFSQECVSNFERTHNCRI
TSETTNCLMIIGDADLVYVT
NSRAMSHFKISLSNISSKEI
VPVLNVNQATIFDIDQVGSL
STFPFVYKYL
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 568 |
15N chemical shifts | 151 |
1H chemical shifts | 352 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Est3 protein | 1 |
Entities:
Entity 1, Est3 protein 170 residues - 19297.996 Da.
Residues 1-12 were deleted from S. cerevisiae Est3 protein sequence. First serine was part of the cleaved affinity tag.
1 | SER | THR | ASP | SER | VAL | PHE | LEU | GLN | PRO | TRP | |
2 | ILE | LYS | ALA | LEU | ILE | GLU | ASP | ASN | SER | GLU | |
3 | HIS | ASP | GLN | TYR | HIS | PRO | SER | GLY | HIS | VAL | |
4 | ILE | PRO | SER | LEU | THR | LYS | GLN | ASP | LEU | ALA | |
5 | LEU | PRO | HIS | MET | SER | PRO | THR | ILE | LEU | THR | |
6 | ASN | PRO | CYS | HIS | PHE | ALA | LYS | ILE | THR | LYS | |
7 | PHE | TYR | ASN | VAL | CYS | ASP | TYR | LYS | VAL | TYR | |
8 | ALA | SER | ILE | ARG | ASP | SER | SER | HIS | GLN | ILE | |
9 | LEU | VAL | GLU | PHE | SER | GLN | GLU | CYS | VAL | SER | |
10 | ASN | PHE | GLU | ARG | THR | HIS | ASN | CYS | ARG | ILE | |
11 | THR | SER | GLU | THR | THR | ASN | CYS | LEU | MET | ILE | |
12 | ILE | GLY | ASP | ALA | ASP | LEU | VAL | TYR | VAL | THR | |
13 | ASN | SER | ARG | ALA | MET | SER | HIS | PHE | LYS | ILE | |
14 | SER | LEU | SER | ASN | ILE | SER | SER | LYS | GLU | ILE | |
15 | VAL | PRO | VAL | LEU | ASN | VAL | ASN | GLN | ALA | THR | |
16 | ILE | PHE | ASP | ILE | ASP | GLN | VAL | GLY | SER | LEU | |
17 | SER | THR | PHE | PRO | PHE | VAL | TYR | LYS | TYR | LEU |
Samples:
sample_1: Est3 protein, [U-13C; U-15N; U-2H], 280 uM; Bis tris propane 50 mM; MOPS 150 mM; sodium sulfate 50 mM; arginine 100 mM; glutamate 100 mM; NDSB-195 100 mM; DTT 2 mM; D2O 7%; H2O 93%; TSP 0.15 mM
sample_2: Est3 protein, [U-15N], 140 uM; Bis tris propane 50 mM; MOPS 150 mM; sodium sulfate 50 mM; arginine 100 mM; glutamate 100 mM; NDSB-195 100 mM; DTT 2 mM; D2O 10%; H2O 90%; Pf1 phage 9.6 mg/mL
sample_3: Est3 protein, [U-15N], 140 uM; Bis tris propane 50 mM; MOPS 150 mM; sodium sulfate 50 mM; arginine 100 mM; glutamate 100 mM; NDSB-195 100 mM; DTT 2 mM; D2O 10%; H2O 90%
sample_4: Est3 protein, [U-13C; U-15N; U-2H], 280 uM; Bis tris propane 50 mM; MOPS 150 mM; sodium sulfate 50 mM; arginine 100 mM; glutamate 100 mM; NDSB-195 100 mM; DTT 2 mM; D2O 7%; H2O 93%
sample_conditions_1: pH: 7.1; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HNCA TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HN(CA)CB TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HN(CO)CA TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HN(COCA)CB TROSY | sample_1 | isotropic | sample_conditions_1 |
3D HNCO TROSY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HMQC | sample_4 | isotropic | sample_conditions_1 |
3D HMCMCBCA | sample_4 | isotropic | sample_conditions_1 |
3D HMCMCGCBCA | sample_4 | isotropic | sample_conditions_1 |
3D methyl 1H-1H 13C HMQC NOESY | sample_4 | isotropic | sample_conditions_1 |
2D 1H-15N HSQC | sample_2 | anisotropic | sample_conditions_1 |
2D 1H-15N HSQC TROSY | sample_2 | anisotropic | sample_conditions_1 |
2D 1H-15N HSQC | sample_3 | isotropic | sample_conditions_1 |
2D 1H-15N HSQC TROSY | sample_3 | isotropic | sample_conditions_1 |
Software:
VNMRJ v3.1, Varian - collection
ANALYSIS v2.1.5, CCPN - chemical shift assignment, data analysis, peak picking
NMRPipe v2011, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
CYANA v2.1, Guntert, Mumenthaler and Wuthrich - Constraints list generation for structure solution
Rosetta v3.4, David Baker - structure solution
CS-Rosetta_toolbox v1.3, David Baker - structure solution
X-PLOR NIH v2.29, Schwieters, Kuszewski, Tjandra and Clore - structure and constraints validation
NMR spectrometers:
- Varian VNMRS 800 MHz
- Agilent DD2 900 MHz
Related Database Links:
PDB | |
DBJ | GAA24105 |
GB | AHY75987 AJR36748 AJR36943 AJR37282 AJR37668 |
REF | NP_012256 |
SP | Q03096 |
TPG | DAA08536 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts