BMRB Entry 19678

Name: Solution structure of the CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5
Published: 2014-12-22

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PDB ID: 2mig
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19678
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of the CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5

Deposition date: 2013-12-13 Original release date: 2014-12-22

Authors: Bobay, Benjamin; DiGennaro, Peter; Bird, David

Citation: DiGennaro, Peter; Bobay, Benjamin; Bird, David. "Inferring function of CLE peptides from high resolution tertiary structures" Proc. Natl. Acad. Sci. U.S.A. ., .-..

Assembly members:
entity, polymer, 12 residues, 1328.510 Da.

Natural source: Common Name: nematode Taxonomy ID: 6305 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Meloidogyne hapla

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):
entity: RKVPTGSNPQKN

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	32
15N chemical shifts	13
1H chemical shifts	67

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5	1

Entities:

Entity 1, CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5 12 residues - 1328.510 Da.

1

ARG

LYS

VAL

PRO

THR

GLY

SER

ASN

PRO

GLN

2

LYS

ASN

Samples:

sample_1: entity 4 mg/mL; sodium chloride 137 mM; potassium chloride 2.7 mM; sodium phosphate 10 mM; potassium phosphate 1.8 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 140 mM; pH: 7.0; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

ARIA, Linge, O, . - refinement, structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

Bruker Avance 700 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts