BMRB Entry 25554
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25554
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Title: NMR solution structure of nucleotide-free Ran GTPase
Deposition date: 2015-03-26 Original release date: 2016-04-18
Authors: Bacot-Davis, Valjean; Palmenberg, Ann
Citation: Bacot-Davis, Valjean; Palmenberg, Ann. "Nuclear Magnetic Resonance Structure of Ran GTPase Determines C-terminal Tail Conformational Dynamics." J. Biomol. NMR ., .-..
Assembly members:
entity, polymer, 216 residues, 24456.295 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: MAAQGEPQVQFKLVLVGDGG
TGKTTFVKRHLTGEFEKKYV
ATLGVEVHPLVFHTNRGPIK
FNVWDTAGQEKFGGLRDGYY
IQAQCAIIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLC
GNKVDIKDRKVKAKSIVFHR
KKNLQYYDISAKSNYNFEKP
FLWLARKLIGDPNLEFVAMP
ALAPPEVVMDPALAAQYEHD
LEVAQTTALPDEDDDL
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 874 |
| 15N chemical shifts | 294 |
| 1H chemical shifts | 1421 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity | 1 |
Entities:
Entity 1, entity 216 residues - 24456.295 Da.
| 1 | MET | ALA | ALA | GLN | GLY | GLU | PRO | GLN | VAL | GLN | ||||
| 2 | PHE | LYS | LEU | VAL | LEU | VAL | GLY | ASP | GLY | GLY | ||||
| 3 | THR | GLY | LYS | THR | THR | PHE | VAL | LYS | ARG | HIS | ||||
| 4 | LEU | THR | GLY | GLU | PHE | GLU | LYS | LYS | TYR | VAL | ||||
| 5 | ALA | THR | LEU | GLY | VAL | GLU | VAL | HIS | PRO | LEU | ||||
| 6 | VAL | PHE | HIS | THR | ASN | ARG | GLY | PRO | ILE | LYS | ||||
| 7 | PHE | ASN | VAL | TRP | ASP | THR | ALA | GLY | GLN | GLU | ||||
| 8 | LYS | PHE | GLY | GLY | LEU | ARG | ASP | GLY | TYR | TYR | ||||
| 9 | ILE | GLN | ALA | GLN | CYS | ALA | ILE | ILE | MET | PHE | ||||
| 10 | ASP | VAL | THR | SER | ARG | VAL | THR | TYR | LYS | ASN | ||||
| 11 | VAL | PRO | ASN | TRP | HIS | ARG | ASP | LEU | VAL | ARG | ||||
| 12 | VAL | CYS | GLU | ASN | ILE | PRO | ILE | VAL | LEU | CYS | ||||
| 13 | GLY | ASN | LYS | VAL | ASP | ILE | LYS | ASP | ARG | LYS | ||||
| 14 | VAL | LYS | ALA | LYS | SER | ILE | VAL | PHE | HIS | ARG | ||||
| 15 | LYS | LYS | ASN | LEU | GLN | TYR | TYR | ASP | ILE | SER | ||||
| 16 | ALA | LYS | SER | ASN | TYR | ASN | PHE | GLU | LYS | PRO | ||||
| 17 | PHE | LEU | TRP | LEU | ALA | ARG | LYS | LEU | ILE | GLY | ||||
| 18 | ASP | PRO | ASN | LEU | GLU | PHE | VAL | ALA | MET | PRO | ||||
| 19 | ALA | LEU | ALA | PRO | PRO | GLU | VAL | VAL | MET | ASP | ||||
| 20 | PRO | ALA | LEU | ALA | ALA | GLN | TYR | GLU | HIS | ASP | ||||
| 21 | LEU | GLU | VAL | ALA | GLN | THR | THR | ALA | LEU | PRO | ||||
| 22 | ASP | GLU | ASP | ASP | ASP | LEU |
Samples:
RAN_GTPASE: RAN GTPASE, [U-100% 13C; U-100% 15N], 0.5 mM; D2O, [U-100% 2H], 10%; HEPES 20 mM; DTT 2 mM; sodium azide 0.04%; potassium chloride 100 mM; magnesium chloride 2 mM; H2O 90%; D2O 10%
sample_conditions_1: ionic strength: 102 mM; pH: 7.4; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | RAN_GTPASE | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D C(CO)NH | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | RAN_GTPASE | isotropic | sample_conditions_1 |
| 2D 1H-1H TOCSY | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | RAN_GTPASE | isotropic | sample_conditions_1 |
| 3D HNCACB | RAN_GTPASE | isotropic | sample_conditions_1 |
| 31P NMR | RAN_GTPASE | isotropic | sample_conditions_1 |
Software:
CYANA, G??ntert P. - refinement
NMR spectrometers:
- Bruker Avance 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts