BMRB Entry 25816
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25816
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Title: Solution structure of PDZ domain PubMed: 26917351
Deposition date: 2015-10-05 Original release date: 2015-10-05
Authors: Mei, Song
Citation: Mei, Song; Dong, Yuanqiu; Zhang, Jiahai; Zhang, Xuecheng; Tu, Xiaoming. "Solution structure of Q388A3 PDZ domain from Trypanosoma brucei" J. Struct. Biol. 194, 214-217 (2016).
Assembly members:
entity, polymer, 105 residues, 10985.538 Da.
Natural source: Common Name: Trypanosoma Taxonomy ID: 5690 Superkingdom: Eukaryota Kingdom: not available Genus/species: Trypanosoma not available
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: PLTRPYLGFRVAVGRDSSGC
TTLSIQEVTQTYTGSNGGAD
LMGPAFAAGLRVGDQLVRFA
GYTVTELAAFNTVVARHVRP
SASIPVVFSRDGVVMSATIV
VGELE
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 276 |
| 15N chemical shifts | 102 |
| 1H chemical shifts | 572 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity | 1 |
Entities:
Entity 1, entity 105 residues - 10985.538 Da.
| 1 | PRO | LEU | THR | ARG | PRO | TYR | LEU | GLY | PHE | ARG | ||||
| 2 | VAL | ALA | VAL | GLY | ARG | ASP | SER | SER | GLY | CYS | ||||
| 3 | THR | THR | LEU | SER | ILE | GLN | GLU | VAL | THR | GLN | ||||
| 4 | THR | TYR | THR | GLY | SER | ASN | GLY | GLY | ALA | ASP | ||||
| 5 | LEU | MET | GLY | PRO | ALA | PHE | ALA | ALA | GLY | LEU | ||||
| 6 | ARG | VAL | GLY | ASP | GLN | LEU | VAL | ARG | PHE | ALA | ||||
| 7 | GLY | TYR | THR | VAL | THR | GLU | LEU | ALA | ALA | PHE | ||||
| 8 | ASN | THR | VAL | VAL | ALA | ARG | HIS | VAL | ARG | PRO | ||||
| 9 | SER | ALA | SER | ILE | PRO | VAL | VAL | PHE | SER | ARG | ||||
| 10 | ASP | GLY | VAL | VAL | MET | SER | ALA | THR | ILE | VAL | ||||
| 11 | VAL | GLY | GLU | LEU | GLU |
Samples:
sample_1: entity, [U-13C; U-15N], 0.5 mM; sodium chloride 100 mM
sample_conditions_1: ionic strength: 0.1 M; pH: 6.5; pressure: 1 atm; temperature: 293 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
SPARKY, Goddard - chemical shift assignment
NMR spectrometers:
- Bruker DMX 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts