BMRB Entry 34182
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR34182
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Title: Solution structure of the LEDGF/p75 IBD - IWS1 (aa 446-548) complex PubMed: 29997176
Deposition date: 2017-10-03 Original release date: 2018-07-20
Authors: Veverka, V.
Citation: Sharma, S.; Cermakova, K.; De Rijck, J.; Demeulemeester, J.; Fabry, M.; El Ashkar, S.; Van Belle, S.; Lepsik, M.; Tesina, P.; Duchoslav, V.; Novak, P.; Hubalek, M.; Srb, P.; Christ, F.; Rezacova, P.; Hodges, H.; Debyser, Z.; Veverka, V.. "Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation." Proc. Natl. Acad. Sci. U.S.A. 115, E7053-E7062 (2018).
Assembly members:
entity_1, polymer, 206 residues, 23837.502 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: SNAASWETSMDSRLQRIHAE
IKNSLKIDNLDVNRCIEALD
ELASLQVTMQQAQKHTEMIT
TLKKIRRFKVSQVIMEKSTM
LYNKFKNMFLVGEGDSVITQ
VLNKELSDKKNEEKDLFGSD
SESGNEEENLIADIFGESGD
EEEEEFTGFNQEDLEEEKGE
TQVKEAEDSDSDDNIKRGKH
MDFLSDFEMMLQRKKSMSGK
RRRNRD
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 850 |
| 15N chemical shifts | 214 |
| 1H chemical shifts | 1343 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 206 residues - 23837.502 Da.
| 1 | SER | ASN | ALA | ALA | SER | TRP | GLU | THR | SER | MET | ||||
| 2 | ASP | SER | ARG | LEU | GLN | ARG | ILE | HIS | ALA | GLU | ||||
| 3 | ILE | LYS | ASN | SER | LEU | LYS | ILE | ASP | ASN | LEU | ||||
| 4 | ASP | VAL | ASN | ARG | CYS | ILE | GLU | ALA | LEU | ASP | ||||
| 5 | GLU | LEU | ALA | SER | LEU | GLN | VAL | THR | MET | GLN | ||||
| 6 | GLN | ALA | GLN | LYS | HIS | THR | GLU | MET | ILE | THR | ||||
| 7 | THR | LEU | LYS | LYS | ILE | ARG | ARG | PHE | LYS | VAL | ||||
| 8 | SER | GLN | VAL | ILE | MET | GLU | LYS | SER | THR | MET | ||||
| 9 | LEU | TYR | ASN | LYS | PHE | LYS | ASN | MET | PHE | LEU | ||||
| 10 | VAL | GLY | GLU | GLY | ASP | SER | VAL | ILE | THR | GLN | ||||
| 11 | VAL | LEU | ASN | LYS | GLU | LEU | SER | ASP | LYS | LYS | ||||
| 12 | ASN | GLU | GLU | LYS | ASP | LEU | PHE | GLY | SER | ASP | ||||
| 13 | SER | GLU | SER | GLY | ASN | GLU | GLU | GLU | ASN | LEU | ||||
| 14 | ILE | ALA | ASP | ILE | PHE | GLY | GLU | SER | GLY | ASP | ||||
| 15 | GLU | GLU | GLU | GLU | GLU | PHE | THR | GLY | PHE | ASN | ||||
| 16 | GLN | GLU | ASP | LEU | GLU | GLU | GLU | LYS | GLY | GLU | ||||
| 17 | THR | GLN | VAL | LYS | GLU | ALA | GLU | ASP | SER | ASP | ||||
| 18 | SER | ASP | ASP | ASN | ILE | LYS | ARG | GLY | LYS | HIS | ||||
| 19 | MET | ASP | PHE | LEU | SER | ASP | PHE | GLU | MET | MET | ||||
| 20 | LEU | GLN | ARG | LYS | LYS | SER | MET | SER | GLY | LYS | ||||
| 21 | ARG | ARG | ARG | ASN | ARG | ASP |
Samples:
sample_1: LEDGF/p75 IBD-IWS1, [U-13C; U-15N], 0.5 mM; TRIS 50 mM; sodium chloride 150 mM
sample_conditions_1: ionic strength: 200 mM; pH: 7; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN - refinement
SPARKY - structure solution
CYANA - structure solution
NMR spectrometers:
- Bruker AvanceIII 850 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts