BMRB Entry 34202
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR34202
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Title: PH domain from PfAPH
Deposition date: 2017-11-23 Original release date: 2018-12-04
Authors: Darvill, N.; Liu, B.; Matthews, S.; Soldati-Favre, D.; Rouse, S.; Benjamin, S.; Blake, T.; Dubois, D.; Hammoudi, P.; Pino, P.
Citation: Darvill, N.; Matthews, S.; Liu, B.; Soldati-Favre, D.; Rouse, S.; Benjamin, S.; Blake, T.; Dubois, D.; Hammoudi, P.; Pino, P.. "C-terminal PH domain from P. falciparum acylated plekstrin homology domain containing protein (APH)" . ., .-..
Assembly members:
entity_1, polymer, 119 residues, 13905.197 Da.
Natural source: Common Name: Plasmodium falciparum Taxonomy ID: 1036725 Superkingdom: Eukaryota Kingdom: not available Genus/species: Plasmodium falciparum
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: SAKDIKDEKIQQYRKTLTKI
VKIKTAIFHETVKVTCSKDG
KMLEWYKGKNDSDGKKKPIG
SFPLNKITSIRTKVDNLKSL
EISVSSVHISTYLFTFKTRE
ERESWQNNLESFRKIMSMK
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 557 |
| 15N chemical shifts | 122 |
| 1H chemical shifts | 885 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 119 residues - 13905.197 Da.
| 1 | SER | ALA | LYS | ASP | ILE | LYS | ASP | GLU | LYS | ILE | ||||
| 2 | GLN | GLN | TYR | ARG | LYS | THR | LEU | THR | LYS | ILE | ||||
| 3 | VAL | LYS | ILE | LYS | THR | ALA | ILE | PHE | HIS | GLU | ||||
| 4 | THR | VAL | LYS | VAL | THR | CYS | SER | LYS | ASP | GLY | ||||
| 5 | LYS | MET | LEU | GLU | TRP | TYR | LYS | GLY | LYS | ASN | ||||
| 6 | ASP | SER | ASP | GLY | LYS | LYS | LYS | PRO | ILE | GLY | ||||
| 7 | SER | PHE | PRO | LEU | ASN | LYS | ILE | THR | SER | ILE | ||||
| 8 | ARG | THR | LYS | VAL | ASP | ASN | LEU | LYS | SER | LEU | ||||
| 9 | GLU | ILE | SER | VAL | SER | SER | VAL | HIS | ILE | SER | ||||
| 10 | THR | TYR | LEU | PHE | THR | PHE | LYS | THR | ARG | GLU | ||||
| 11 | GLU | ARG | GLU | SER | TRP | GLN | ASN | ASN | LEU | GLU | ||||
| 12 | SER | PHE | ARG | LYS | ILE | MET | SER | MET | LYS |
Samples:
sample_1: C-terminal PH domain from PfAPH, [U-100% 15N; U-100% 13C], 830 uM; NaCl 300 mM
sample_conditions_1: ionic strength: 300 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D C(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
ARIA, Linge, O'Donoghue and Nilges - structure calculation
NMRView, Brunger A. T. et.al., Johnson, One Moon Scientific - chemical shift assignment, peak picking, refinement
NMR spectrometers:
- Bruker AvanceIII 600 MHz
- Bruker DRX 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts