BMRB Entry 4506
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4506
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Title: Solution structure of carnobacteriocin B2 PubMed: 10569926
Deposition date: 1999-10-08 Original release date: 2000-10-02
Authors: Wang, Y.; Henz, M.; Gallagher, N.; Chai, S.; Yan, L.; Gibbs, A.; Stiles, M.; Wishart, D.; Vederas, J.
Citation: Wang, Y.; Henz, M.; Gallagher, N.; Chai, S.; Yan, L.; Gibbs, A.; Stiles, M.; Wishart, D.; Vederas, J.. "Solution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria" Biochemistry 47, 15438-15447 (1999).
Assembly members:
type IIA bacteriocin carnobacteriocin B2, polymer, 48 residues, Formula weight is not available
Natural source: Common Name: Carnobacterium piscicola Taxonomy ID: 2751 Superkingdom: Bacteria Kingdom: not available Genus/species: Carnobacterium piscicola
Experimental source: Production method: purified from natural source
Entity Sequences (FASTA):
type IIA bacteriocin carnobacteriocin B2: VNYGNGVSCSKTKCSVNWGQ
AFQERYTAGINSFVSGVASG
AGSIGRRP
- assigned_chemical_shifts
- coupling_constants
| Data type | Count |
| 1H chemical shifts | 191 |
| coupling constants | 8 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | carnobacteriocin B2 | 1 |
Entities:
Entity 1, carnobacteriocin B2 48 residues - Formula weight is not available
| 1 | VAL | ASN | TYR | GLY | ASN | GLY | VAL | SER | CYS | SER | ||||
| 2 | LYS | THR | LYS | CYS | SER | VAL | ASN | TRP | GLY | GLN | ||||
| 3 | ALA | PHE | GLN | GLU | ARG | TYR | THR | ALA | GLY | ILE | ||||
| 4 | ASN | SER | PHE | VAL | SER | GLY | VAL | ALA | SER | GLY | ||||
| 5 | ALA | GLY | SER | ILE | GLY | ARG | ARG | PRO |
Samples:
sample_1: type IIA bacteriocin carnobacteriocin B2 5 mg; TFE-D3 700 uL
sample_cond_1: pH: 2.8; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
Software:
X-PLOR v3.85 - structure solution
VNMR v5.1 - processing
NMR spectrometers:
- Varian Unity 500 MHz
- Varian Inova 600 MHz