BMRB Entry 4745

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4745

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution Conformation of a Bulged Adenosine in an RNA Duplex by Relaxation Matrix Refinement

Deposition date: 2000-05-22 Original release date: 2000-12-18

Authors: Thiviyanathan, Varatharasa; Guliaev, Anton; Leontis, Neocles; Gorenstein, David

Citation: Thiviyanathan, Varatharasa; Guliaev, Anton; Leontis, Neocles; Gorenstein, David. "Solution Conformation of a Bulged Adenosine in an RNA Duplex by Relaxation Matrix Refinement" J. Mol. Biol. 300, 1143-1154 (2000).

Assembly members:
RNA, polymer, 13 residues, Formula weight is not available
RNA, polymer, 12 residues, Formula weight is not available

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):
RNA: GGCAGAGUGCCGC
RNA: GCGGCACCUGCC

Data sets:

assigned_chemical_shifts
- RNA_1_shifts
- RNA_2_shifts

Data type	Count
1H chemical shifts	164

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	bulged RNA, duplex 1	1
2	bulged RNA, duplex 2	2

Entities:

Entity 1, bulged RNA, duplex 1 13 residues - Formula weight is not available

1

G

C

A

G

A

G

U

G

C

2

C

G

C

Entity 2, bulged RNA, duplex 2 12 residues - Formula weight is not available

1

G

C

G

C

A

C

U

G

2

C

Samples:

sample_1: RNA 1.0 mM; RNA 1.0 mM

conditions: pH: 6.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Varian VXR 500 MHz
Varian UnityPlus 600 MHz