BMRB Entry 5210
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5210
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Title: NMR Solution Structure of sTva47, the Viral-Binding Domain of Tva PubMed: 11768384
Deposition date: 2001-11-15 Original release date: 2002-02-05
Authors: Tonelli, M.; Peters, R.; James, T.; Agard, D.
Citation: Tonelli, M.; Peters, R.; James, T.; Agard, D.. "The Solution Structure of the Viral-Binding Domain of Tva, the Cellular Receptor for Subgroup A Avian Leukosis and Sarcoma Virus" FEBS Lett. 509, 161-168 (2001).
Assembly members:
subgroup A Rous Sarcoma virus receptors, polymer, 47 residues, Formula weight is not available
Natural source: Common Name: Quail Taxonomy ID: 9008 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Callipepla not available
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
subgroup A Rous Sarcoma virus receptors: ISEFGSCPPGQFRCSEPPGA
HGECYPQDWLCDGHPDCDDG
RDEWGCG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 135 |
| 15N chemical shifts | 44 |
| 1H chemical shifts | 245 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | subgroup A Rous Sarcoma virus receptors | 1 |
Entities:
Entity 1, subgroup A Rous Sarcoma virus receptors 47 residues - Formula weight is not available
| 1 | ILE | SER | GLU | PHE | GLY | SER | CYS | PRO | PRO | GLY | ||||
| 2 | GLN | PHE | ARG | CYS | SER | GLU | PRO | PRO | GLY | ALA | ||||
| 3 | HIS | GLY | GLU | CYS | TYR | PRO | GLN | ASP | TRP | LEU | ||||
| 4 | CYS | ASP | GLY | HIS | PRO | ASP | CYS | ASP | ASP | GLY | ||||
| 5 | ARG | ASP | GLU | TRP | GLY | CYS | GLY |
Samples:
sample_1: subgroup A Rous Sarcoma virus receptors, [U-15N; U-13C], 2 mM; sodium acetate, [U-2H], 50 mM; calcium cloride 5 mM; D2O 10%; H2O 90%
sample_cond_1: ionic strength: 0.065 M; pH: 5.5; pressure: 1 atm; temperature: 313 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 15N-separated NOESY | sample_1 | not available | sample_cond_1 |
| 3D 13C-separated NOESY | sample_1 | not available | sample_cond_1 |
Software:
VNMR v6.1 - collection
NMRPipe vsgi6x - processing
SPARKY v3 - data analysis
DYANA v1.5 - refinement
AMBER v6.0 - refinement
NMR spectrometers:
- Varian UnityPlus 600 MHz
- Bruker DMX 600 MHz
Related Database Links:
| PDB |
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CSV: Backbone
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SPARKY: Backbone
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