BMRB Entry 5253
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5253
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Title: Structural Differences in the NOE-derived Structure of G-T Mismatched DNA relative to Normal DNA are Correlated with Differences in (13)C Relaxation-based Internal Dynamics PubMed: 12051946
Deposition date: 2002-01-09 Original release date: 2002-09-10
Authors: Isaacs, R.; Rayens, W.; Spielmann, H.
Citation: Isaacs, R.; Rayens, W.; Spielmann, H.. "Structural Differences in the NOE-derived Structure of G-T Mismatched DNA relative to Normal DNA are Correlated with Differences in (13)C Relaxation-based Internal Dynamics" J. Mol. Biol. 319, 191-207 (2002).
Assembly members:
5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3', polymer, 10 residues, Formula weight is not available
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3': CCATGCGTGG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 88 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' | 1 |
| 2 | 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' | 1 |
Entities:
Entity 1, 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' 10 residues - Formula weight is not available
| 1 | DC | DC | DA | DT | DG | DC | DG | DT | DG | DG |
Samples:
sample_1: 5'-D(*CP*CP*AP*TP*GP*CP*GP*TP*GP*G)-3' 8 mL; NaCl 200 mM; NaPO4 20 mM; NaN3 10 mM; EDTA 0.1 mM; D2O 99.96%
sample_cond_1: ionic strength: 0.230 M; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
Software:
VNMR v6b - collection
FELIX v98.0 - data analysis
MARDIGRAS v1 - iterative matrix relaxation
DISCOVER v2.98 - structure solution
NMR spectrometers:
- Varian INOVA 500 MHz