BMRB Entry 5834

Name: Solution structure of the HIV-1 frameshift inducing stem-loop RNA
Published: 2003-09-12

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5834

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of the HIV-1 frameshift inducing stem-loop RNA PubMed: 12888491

Deposition date: 2003-06-17 Original release date: 2003-09-12

Authors: Staple, David; Butcher, Samuel

Citation: Staple, David; Butcher, Samuel. "Solution Structure of the HIV-1 Frameshift Inducing Stem-loop RNA" Nucleic Acids Res. 31, 4326-4331 (2003).

Assembly members:
HIV-1 frameshift inducing stem-loop RNA, polymer, 22 residues, Formula weight is not available

Natural source: Common Name: HIV Taxonomy ID: 12721 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):
HIV-1 frameshift inducing stem-loop RNA: GGCCUUCCCACAAGGGAAGG CC

Data sets:

assigned_chemical_shifts
- chemical_shift_list

Data type	Count
13C chemical shifts	59
15N chemical shifts	31
1H chemical shifts	155

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HIV-1 frameshift inducing stem-loop RNA	1

Entities:

Entity 1, HIV-1 frameshift inducing stem-loop RNA 22 residues - Formula weight is not available

1

G

C

U

C

A

2

C

A

G

A

G

3

C

Samples:

Sample_1: HIV-1 frameshift inducing stem-loop RNA 1.0 mM

condition_1: pH: 6.8; temperature: 303 K

condition_2: pH: 6.8; temperature: 283 K

condition_3: pH: 6.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-1H NOESY	not available	not available	not available
1H-1H TOCSY	not available	not available	not available
1H-13C HSQC	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
HCCH-COSY	not available	not available	not available
HNN-COSY	not available	not available	not available
1H-13C-1H NOESY HMQC	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Bruker DMX 750 MHz
Bruker DMX 600 MHz