BMRB Entry 5912

Name: The 3D solution structure of the C-terminal region of Ku86
Published: 2004-05-15

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5912

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: The 3D solution structure of the C-terminal region of Ku86 PubMed: 14672664

Deposition date: 2003-08-20 Original release date: 2004-05-15

Authors: Harris, R.; Esposito, D.; Sankar, A.; Maman, J.; Hinks, J.; Pearl, L.; Driscoll, P.

Citation: Harris, R.; Esposito, D.; Sankar, A.; Maman, J.; Hinks, J.; Pearl, L.; Driscoll, P.. "The 3D solution structure of the C-terminal region of Ku86 (Ku86CTR)" J. Mol. Biol. 335, 573-582 (2004).

Assembly members:
C-terminal region of Ku86, polymer, 120 residues, Formula weight is not available

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
C-terminal region of Ku86: GPVNPAENFRVLVKQKKASF EEASNQLINHIEQFLDTNET PYFMKSIDCIRAFREEAIKF SEEQRFNNFLKALQEKVEIK QLNHFWEIVVQDGITLITKE EASGSSVTAEEAKKFLAPKD

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	847
13C chemical shifts	535
15N chemical shifts	121

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH2-SH3 adapter protein drk	1

Entities:

Entity 1, SH2-SH3 adapter protein drk 120 residues - Formula weight is not available

1	GLY	PRO	VAL	ASN	PRO	ALA	GLU	ASN	PHE	ARG
2	VAL	LEU	VAL	LYS	GLN	LYS	LYS	ALA	SER	PHE
3	GLU	GLU	ALA	SER	ASN	GLN	LEU	ILE	ASN	HIS
4	ILE	GLU	GLN	PHE	LEU	ASP	THR	ASN	GLU	THR
5	PRO	TYR	PHE	MET	LYS	SER	ILE	ASP	CYS	ILE
6	ARG	ALA	PHE	ARG	GLU	GLU	ALA	ILE	LYS	PHE
7	SER	GLU	GLU	GLN	ARG	PHE	ASN	ASN	PHE	LEU
8	LYS	ALA	LEU	GLN	GLU	LYS	VAL	GLU	ILE	LYS
9	GLN	LEU	ASN	HIS	PHE	TRP	GLU	ILE	VAL	VAL
10	GLN	ASP	GLY	ILE	THR	LEU	ILE	THR	LYS	GLU
11	GLU	ALA	SER	GLY	SER	SER	VAL	THR	ALA	GLU
12	GLU	ALA	LYS	LYS	PHE	LEU	ALA	PRO	LYS	ASP

Samples:

sample_1: C-terminal region of Ku86, [U-15N], 1 mM; Phosphate 20 mM; NaCl 100 mM; NaN3 1 mM; H2O 90%; D2O 10%

sample_2: C-terminal region of Ku86, [U-13C; U-15N], 1 mM; Phosphate 20 mM; NaCl 100 mM; NaN3 1 mM; H2O 90%; D2O 10%

sample_3: C-terminal region of Ku86, [U-15N], 1 mM; Phosphate 20 mM; NaCl 100 mM; NaN3 1 mM; n-octyl-penta(ethylene glycol):octanol 0.96:1 5%; H2O 90%; D2O 10%

sample_cond_1: pH: 7.0; temperature: 298 K; ionic strength: 100 mM; pressure: 1 atm

sample_cond_2: pH: 7.0; temperature: 293 K; ionic strength: 100 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
IPAP	not available	not available	not available

Software:

ANSIG v1.0.3 - data analysis

NMRPipe v1 - processing

CNS v1.1 - refinement

VNMR v6.1B - collection

NMR spectrometers:

Varian INOVA 800 MHz

BMRB	5221 5907
PDB	1Q2Z 1RW2
DBJ	BAD96323 BAF83429 BAH24115
EMBL	CAA40736
GB	AAA36154 AAA59475 AAH19027 AAH95442 AAR11279
REF	NP_066964 XP_001151873 XP_003254095 XP_004033222 XP_005246893
SP	P13010

Biological Magnetic Resonance Data Bank