BMRB Entry 5998
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5998
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Title: 1H, 15N and 13C resonance assignments of the ApaG/CorD protein of the phytopathogen Xanthomonas axonopodis pv. citri PubMed: 15213450
Deposition date: 2003-11-06 Original release date: 2004-07-06
Authors: Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma
Citation: Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma. "Letter to the Editor: 1H, 15N and 13C resonance assignments of the ApaG protein of the phytopathogen Xanthomonas axonopodis pv. citri" J. Biomol. NMR 29, 423-424 (2004).
Assembly members:
ApaG protein, polymer, 127 residues, 14229 Da.
Natural source: Common Name: Xanthomonas axonopodis pv. citri Taxonomy ID: 53413 Superkingdom: Eubacteria Kingdom: not available Genus/species: Xanthomonas axonopodis
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
ApaG protein: MQDDPRYRVEVEVSPRFLAH
QSTPDEGRYAFAYSIRIQNA
GAVPARLVARHWQITDGNGR
TEQVDGEGVVGEQPWLRPGE
AFHYTSGVLLETEQGQMQGH
YDMVADDGTEFIAPIAAFVL
SVPRTLH
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 802 |
| 13C chemical shifts | 523 |
| 15N chemical shifts | 111 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | ApaG monomer | 1 |
Entities:
Entity 1, ApaG monomer 127 residues - 14229 Da.
| 1 | MET | GLN | ASP | ASP | PRO | ARG | TYR | ARG | VAL | GLU | ||||
| 2 | VAL | GLU | VAL | SER | PRO | ARG | PHE | LEU | ALA | HIS | ||||
| 3 | GLN | SER | THR | PRO | ASP | GLU | GLY | ARG | TYR | ALA | ||||
| 4 | PHE | ALA | TYR | SER | ILE | ARG | ILE | GLN | ASN | ALA | ||||
| 5 | GLY | ALA | VAL | PRO | ALA | ARG | LEU | VAL | ALA | ARG | ||||
| 6 | HIS | TRP | GLN | ILE | THR | ASP | GLY | ASN | GLY | ARG | ||||
| 7 | THR | GLU | GLN | VAL | ASP | GLY | GLU | GLY | VAL | VAL | ||||
| 8 | GLY | GLU | GLN | PRO | TRP | LEU | ARG | PRO | GLY | GLU | ||||
| 9 | ALA | PHE | HIS | TYR | THR | SER | GLY | VAL | LEU | LEU | ||||
| 10 | GLU | THR | GLU | GLN | GLY | GLN | MET | GLN | GLY | HIS | ||||
| 11 | TYR | ASP | MET | VAL | ALA | ASP | ASP | GLY | THR | GLU | ||||
| 12 | PHE | ILE | ALA | PRO | ILE | ALA | ALA | PHE | VAL | LEU | ||||
| 13 | SER | VAL | PRO | ARG | THR | LEU | HIS |
Samples:
sample_1: ApaG protein, [U-100% 13C; U-100% 15N], 0.5 mM; NaCl 50 mM; NaH2PO4 40 mM
cond_1: pH: 6.8 na; temperature: 303 K; ionic strength: 0.06 M
cond_2: pH: 6.8 na; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| HNCA | not available | not available | not available |
| HN(CO)CA | not available | not available | not available |
| HNCO | not available | not available | not available |
| HN(CA)CO | not available | not available | not available |
| HNCACB | not available | not available | not available |
| CBCACONH | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
| HCCH-COSY | not available | not available | not available |
| HACACO | not available | not available | not available |
| NOESY-CHSQC | not available | not available | not available |
| CHSQC | not available | not available | not available |
| NHSQC | not available | not available | not available |
Software:
nmrPipe v5.0 -
nmrView v5.0 -
NMR spectrometers:
- Varian Inova 600 MHz
- Bruker DRX 700 MHz
Related Database Links:
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts