BMRB Entry 15108
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15108
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Title: NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC). PubMed: 17488723
Deposition date: 2007-01-23 Original release date: 2007-10-17
Authors: Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Ouldali, M.; Da Costa, B.; Lepault, J.; Delmas, B.
Citation: Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Da Costa, B.; Ouldali, M.; Lepault, J.; Delmas, B.. "Infectious bursal disease virus, a non-enveloped virus, possesses a capsid-associated peptide that deforms and perforates biological membranes" J. Biol. Chem. 282, 20774-20784 (2007).
Assembly members:
IBDV_p1_peptide, polymer, 46 residues, Formula weight is not available
Natural source: Common Name: Gumboro virus Taxonomy ID: 10995 Superkingdom: Viruses Kingdom: not available Genus/species: Avibirnavirus Gumboro virus
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
IBDV_p1_peptide: FGFKDIIRAIRRIAVPVVST
LFPPAAPLAHAIGEGVDYLL
GDEAQA
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 318 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | p1 | 1 |
Entities:
Entity 1, p1 46 residues - Formula weight is not available
| 1 | PHE | GLY | PHE | LYS | ASP | ILE | ILE | ARG | ALA | ILE | ||||
| 2 | ARG | ARG | ILE | ALA | VAL | PRO | VAL | VAL | SER | THR | ||||
| 3 | LEU | PHE | PRO | PRO | ALA | ALA | PRO | LEU | ALA | HIS | ||||
| 4 | ALA | ILE | GLY | GLU | GLY | VAL | ASP | TYR | LEU | LEU | ||||
| 5 | GLY | ASP | GLU | ALA | GLN | ALA |
Samples:
sample: pep46 1 mM; DPC 40 mM
sample_conditions_1: ionic strength: 0 mM; pH: 3.5; pressure: 1 atm; temperature: 333 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample | isotropic | sample_conditions_1 |
| 2D TOCSY | sample | isotropic | sample_conditions_1 |
Software:
xwinnmr v3.0, Bruker Biospin - collection
X-PLOR v3.851, Brunger - structure solution
NMR spectrometers:
- Bruker AVANCE 600 MHz