BMRB Entry 18542
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18542
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Title: Structure and Binding Interface of the Cytosolic Tails of aXb2 Integrin PubMed: 22844534
Deposition date: 2012-06-21 Original release date: 2012-08-23
Authors: Tan, Suet Mien; Tang, Xiao Yan; Patra, Tanala
Citation: Chua, Geok-Lin; Tang, Xiao-Yan; Patra, Alok Tanala; Tan, Suet-Mien; Bhattacharjya, Surajit. "Structure and binding interface of the cytosolic tails of X2 integrin." PLoS ONE 7, e41924-e41924 (2012).
Assembly members:
entity, polymer, 35 residues, 3960.458 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity: KVGFFKRQYKEMMEEANGQI
APENGTQTPSPPSEK
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 28 |
| 1H chemical shifts | 163 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Cytosolic Tails of aXb2 Integrin | 1 |
Entities:
Entity 1, Cytosolic Tails of aXb2 Integrin 35 residues - 3960.458 Da.
| 1 | LYS | VAL | GLY | PHE | PHE | LYS | ARG | GLN | TYR | LYS | ||||
| 2 | GLU | MET | MET | GLU | GLU | ALA | ASN | GLY | GLN | ILE | ||||
| 3 | ALA | PRO | GLU | ASN | GLY | THR | GLN | THR | PRO | SER | ||||
| 4 | PRO | PRO | SER | GLU | LYS |
Samples:
MYR-ALPHA-X: DPC, [U-99% 2H], 200 mM; sodium phosphate 10 mM; D2O, [U-100% 2H], 10%; dodeclyphosphocholine 200 mM; H2O 90%; MYR-ALPHA-X 0.7 mM
MYR-ALPHA-X-D2O: DPC, [U-99% 2H], 200 mM; sodium phosphate 10 mM; D2O, [U-100% 2H], 100%; dodeclyphosphocholine 200 mM; MYR-ALPHA-X 0.7 mM
sample_conditions_1: ionic strength: 0 M; pH: 5.6; pressure: 1 atm; temperature: 308 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | MYR-ALPHA-X | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | MYR-ALPHA-X | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | MYR-ALPHA-X-D2O | isotropic | sample_conditions_1 |
| 2D 1H-1H NOESY | MYR-ALPHA-X-D2O | isotropic | sample_conditions_1 |
Software:
TOPSPIN v2.1, Bruker Biospin - collection, processing
SPARKY, Goddard - chemical shift assignment
CYANA v2.0, Guntert, Mumenthaler and Wuthrich - structure solution
NMR spectrometers:
- Bruker DRX 600 MHz
Related Database Links:
| PDB | |
| DBJ | BAB84873 |
| GB | AAA51620 AAA59180 AAH38237 AAX29959 ABM83412 |
| REF | NP_000878 NP_001273304 XP_002826429 XP_003280513 XP_004057604 |
| SP | P20702 |