BMRB Entry 19155
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19155
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Title: NMR Structure of CbpAN from Streptococcus pneumoniae
Deposition date: 2013-04-10 Original release date: 2014-04-14
Authors: Liu, Aizhuo; Yan, Honggao; Achila, David; Martinez-Hackert, Erik; Li, Yue; Banerjee, Rahul
Citation: Liu, Aizhuo; Achila, David; Banerjee, Rahul; Martinez-Hackert, Erik; Li, Yue; Yan, Honggao. "Host Specification of Factor H Binding by Streptococcus pneumoniae" Nature ., .-..
Assembly members:
entity, polymer, 85 residues, 9522.928 Da.
Natural source: Common Name: firmicutes Taxonomy ID: 1313 Superkingdom: Bacteria Kingdom: not available Genus/species: Streptococcus pneumoniae
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: GHMLDSERDKARKEVEEYVK
KIVGESYAKSTKKRHTITVA
LVNELNNIKNEYLNKIVEST
SESQLQILMMESRSKVDEAV
SKFEK
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 356 |
| 15N chemical shifts | 87 |
| 1H chemical shifts | 602 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | CbpAN | 1 |
Entities:
Entity 1, CbpAN 85 residues - 9522.928 Da.
| 1 | GLY | HIS | MET | LEU | ASP | SER | GLU | ARG | ASP | LYS | ||||
| 2 | ALA | ARG | LYS | GLU | VAL | GLU | GLU | TYR | VAL | LYS | ||||
| 3 | LYS | ILE | VAL | GLY | GLU | SER | TYR | ALA | LYS | SER | ||||
| 4 | THR | LYS | LYS | ARG | HIS | THR | ILE | THR | VAL | ALA | ||||
| 5 | LEU | VAL | ASN | GLU | LEU | ASN | ASN | ILE | LYS | ASN | ||||
| 6 | GLU | TYR | LEU | ASN | LYS | ILE | VAL | GLU | SER | THR | ||||
| 7 | SER | GLU | SER | GLN | LEU | GLN | ILE | LEU | MET | MET | ||||
| 8 | GLU | SER | ARG | SER | LYS | VAL | ASP | GLU | ALA | VAL | ||||
| 9 | SER | LYS | PHE | GLU | LYS |
Samples:
sample_1: DSS 50 uM; sodium azide 100 uM; sodium phosphate 50 mM; sodium chloride 50 mM; H20 95%; D20 5%; CbpAN_protein, 15N/13C-labeled, 1 mM
sample_2: DSS 50 uM; sodium azide 100 uM; sodium phosphate 50 mM; sodium chloride 50 mM; D20 100%; CbpAN_protein, 15N/13C-labeled, 1 mM
sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_2 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aromatic | sample_2 | isotropic | sample_conditions_1 |
Software:
CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution
NMR spectrometers:
- Bruker Avance 900 MHz
Related Database Links:
| PDB | |
| EMBL | CEV61387 CEW81978 CEW91983 CEW94993 CEY00327 |
| GB | AAF13459 AAF73792 AAF73796 AAF73807 AAF73821 |
| REF | WP_000458186 WP_000458187 WP_000458188 WP_000458189 WP_000458190 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts