BMRB Entry 19312
Click here to enlarge.
PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19312
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Solution NMR Structure of Transcription Factor GATA-4 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR4783B
Deposition date: 2013-06-20 Original release date: 2013-07-08
Authors: Xu, Xianzhong; Eletsky, Alexander; Lee, Dan; Kohn, Eitan; Janjua, Haleema; Xiao, Rong; Acton, Thomas; Everett, John; Montelione, Gaetano; Szyperski, Thomas
Citation: Xu, Xianzhong; Eletsky, Alexander; Lee, Dan; Kohn, Eitan; Janjua, Haleema; Xiao, Rong; Acton, Thomas; Everett, John; Montelione, Gaetano; Szyperski, Thomas. "Solution NMR Structure of a Transcription Factor GATA-4 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR4783B" To be published ., .-..
Assembly members:
HR4783B, polymer, 63 residues, 7120.694 Da.
ZINC ION, non-polymer, 65.409 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
HR4783B: SHMSASRRVGLSCANCQTTT
TTLWRRNAEGEPVCNACGLY
MKLHGVPRPLAMRKEGIQTR
KRK
- assigned_chemical_shifts
- spectral_peak_list
| Data type | Count |
| 13C chemical shifts | 253 |
| 15N chemical shifts | 62 |
| 1H chemical shifts | 395 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | HR4783B | 1 |
| 2 | ZINC ION | 2 |
Entities:
Entity 1, HR4783B 63 residues - 7120.694 Da.
Residues 1-3 represent the remained purification His tag after cleavage.
| 1 | SER | HIS | MET | SER | ALA | SER | ARG | ARG | VAL | GLY | ||||
| 2 | LEU | SER | CYS | ALA | ASN | CYS | GLN | THR | THR | THR | ||||
| 3 | THR | THR | LEU | TRP | ARG | ARG | ASN | ALA | GLU | GLY | ||||
| 4 | GLU | PRO | VAL | CYS | ASN | ALA | CYS | GLY | LEU | TYR | ||||
| 5 | MET | LYS | LEU | HIS | GLY | VAL | PRO | ARG | PRO | LEU | ||||
| 6 | ALA | MET | ARG | LYS | GLU | GLY | ILE | GLN | THR | ARG | ||||
| 7 | LYS | ARG | LYS |
Entity 2, ZINC ION - Zn - 65.409 Da.
| 1 | ZN |
Samples:
hr4783b.009: HR4783B.009, [U-100% 13C; U-100% 15N], 0.378 mM; sodium chloride 100 mM; DTT 5 mM; Tris-HCl 10 mM; DSS 50 uM; sodium azide 0..02%; ZINC ION 50 uM; H2O 90%; D2O 10%
hr4783b.005: HR4783B.009, [U-5% 13C; U-100% 15N], 0.156 mM; sodium chloride 100 mM; DTT 5 mM; Tris-HCl 10 mM; DSS 50 uM; sodium azide 0..02%; ZINC ION 50 uM; H2O 90%; D2O 10%
sample_conditions_1: pH: 7.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | hr4783b.009 | isotropic | sample_conditions_1 |
| 2D CT 1H-13C HSQC ali | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D HNCO | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D HNCACB | hr4783b.009 | isotropic | sample_conditions_1 |
| 2D CT 1H-13C HSQC aro | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D CCH-TOCSY | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | hr4783b.009 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC_His | hr4783b.009 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC_wide | hr4783b.009 | isotropic | sample_conditions_1 |
| 3D (H)CCH-COSY ali | hr4783b.009 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC_methyl | hr4783b.005 | isotropic | sample_conditions_1 |
Software:
CNS v1.3, Brunger, Adams, Clore, Gros, Nilges and Read - refinemen,structure solution,geometry optimization
CYANA v3.0, Guntert, Mumenthaler and Wuthrich - refinement,geometry optimization,structure solution
AutoStruct v2.1, Huang, Tejero, Powers and Montelione - data analysis,refinement
AutoAssign v2.3.1, Zimmerman, Moseley, Kulikowski and Montelione - data analysis,chemical shift assignment
XEASY, Bartels et al. - data analysis,peak picking,chemical shift assignment
VNMRJ v2.3.1, Varian - collection
TALOS+, Shen, Cornilescu, Delaglio and Bax - geometry optimization
PSVS v1.4, Bhattacharya, Montelione - structure validation
PROSA, Guntert - data analysis
CSI, (CSI)-Wishart and Sykes - data analysis
CARA v1.8.4, (CARA)-Keller and Wuthrich - chemical shift assignment, data analysis, peak picking
NMR spectrometers:
- Varian INOVA 750 MHz
Related Database Links:
| PDB | |
| GB | ABG02399 ABM67327 AGC95106 EHH28277 EHH63983 |
| REF | XP_005337311 XP_012962956 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts