BMRB Entry 25299
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25299
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Title: Backbone fold of Human Small Ubiquitin like Modifier protein-1 (SUMO-1) based on Prot3D-NMR approach.
Deposition date: 2014-10-28 Original release date: 2014-12-01
Authors: Kumar, Dinesh; jaiswal, Nancy; raikwal, Nisha; Shukla, Vaibhav; Arora, Ashish
Citation: Kumar, Dinesh; jaiswal, Nancy; raikwal, Nisha; Shukla, Vaibhav; Arora, Ashish. "Prot3DNMR: A simple and swift NMR strategy for Three-Dimentional structutral determination of proteins." Not known ., .-..
Assembly members:
entity, polymer, 97 residues, 11149.640 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity: MSDQEAKPSTEDLGDKKEGE
YIKLKVIGQDSSEIHFKVKM
TTHLKKLKESYCQRQGVPMN
SLRFLFEGQRIADNHTPKEL
GMEEEDVIEVYQEQTGG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 440 |
| 13C chemical shifts | 383 |
| 15N chemical shifts | 94 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity | 1 |
Entities:
Entity 1, entity 97 residues - 11149.640 Da.
| 1 | MET | SER | ASP | GLN | GLU | ALA | LYS | PRO | SER | THR | ||||
| 2 | GLU | ASP | LEU | GLY | ASP | LYS | LYS | GLU | GLY | GLU | ||||
| 3 | TYR | ILE | LYS | LEU | LYS | VAL | ILE | GLY | GLN | ASP | ||||
| 4 | SER | SER | GLU | ILE | HIS | PHE | LYS | VAL | LYS | MET | ||||
| 5 | THR | THR | HIS | LEU | LYS | LYS | LEU | LYS | GLU | SER | ||||
| 6 | TYR | CYS | GLN | ARG | GLN | GLY | VAL | PRO | MET | ASN | ||||
| 7 | SER | LEU | ARG | PHE | LEU | PHE | GLU | GLY | GLN | ARG | ||||
| 8 | ILE | ALA | ASP | ASN | HIS | THR | PRO | LYS | GLU | LEU | ||||
| 9 | GLY | MET | GLU | GLU | GLU | ASP | VAL | ILE | GLU | VAL | ||||
| 10 | TYR | GLN | GLU | GLN | THR | GLY | GLY |
Samples:
sample_1: entity, [U-100% 13C; U-100% 15N], 0.9 ± 0.1 mM; sodium phosphate 200 mM
sample_conditions_1: temperature: 298 K; pH: 6.5; pressure: 1 atm; ionic strength: 200 mM
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
CARA v9.8, Keller and Wuthrich - chemical shift assignment
NMR spectrometers:
- Bruker Avance 800 MHz
Related Database Links:
| BMRB | 16611 17536 |
| PDB | |
| DBJ | BAB22172 BAB27379 BAB93477 BAC40739 BAE35024 |
| EMBL | CAA67898 CAG31129 CAG46944 CAG46953 CAH92616 |
| GB | AAB39999 AAB40388 AAB40390 AAC39959 AAC50733 |
| REF | NP_001005781 NP_001005782 NP_001009672 NP_001030535 NP_001106146 |
| SP | A7WLH8 P63165 P63166 Q2EF74 Q5E9D1 |
| TPG | DAA32560 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts