BMRB Entry 4542

Name: Solution structure of a uracil containing hairpin DNA
Published: 2000-12-06

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4542

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of a uracil containing hairpin DNA PubMed: 10481034

Deposition date: 1999-08-20 Original release date: 2000-12-06

Authors: Ghosh, M.; Kumar, N.; Varshney, U.; Chary, K.

Citation: Ghosh, M.; Kumar, N.; Varshney, U.; Chary, K.. "Structural Characterization of a Uracil Containing Hairpin DNA by NMR and Molecular Dynamics" Nucleic Acids Res. 27, 3938-3944 (1999).

Assembly members:
5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*TP*UP*GP*GP*AP*TP*CP*CP*T)-3', polymer, 22 residues, Formula weight is not available

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source: Production method: .

Entity Sequences (FASTA):
5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*TP*UP*GP*GP*AP*TP*CP*CP*T)-3': CTAGAGGATCCTTTXGGATC CT

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	206

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	5'-D(APGPGPAPTPCPCPTPTPTPUPGPGPAPTPCPCPT)-3'	1

Entities:

Entity 1, 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*TP*UP*GP*GP*AP*TP*CP*CP*T)-3' 22 residues - Formula weight is not available

1

DC

DT

DA

DG

DA

DG

DA

DT

DC

2

DC

DT

DU

DG

DA

DT

DC

3

DC

DT

Samples:

sample_1: 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*TP*UP*GP*GP*AP*TP*CP*CP*T)-3' 5 mM; D2O 99%

sample_2: 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*TP*UP*GP*GP*AP*TP*CP*CP*T)-3' 5 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 7.0; pressure: 1 atm; temperature: 305 K

sample_cond_2: pH: 7.0; pressure: 1 atm; temperature: 295 K

Experiments:

Name	Sample	Sample state	Sample conditions
E-COSY	not available	not available	not available
2D NOESY	not available	not available	not available

Software:

VNMR v6.1 - data analysis, data collection

DISCOVER v97 - structure calculation

UXNMR v3.0 - data collection

FELIX v97 - data analysis, data processing

NMR spectrometers:

Bruker AMX 500 MHz