BMRB Entry 5117
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5117
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Title: Structural and Dynamic Differences of Rhodostomin, an RGD-containing Disintegrin, and its D51E mutant PubMed: 11340665
Deposition date: 2001-08-20 Original release date: 2003-04-09
Authors: Chuang, Woei-Jer
Citation: Guo, RT; Chou, LJ; Chen, YC; Chen, CY; Pari, K; Jen, CJ; Lo, SJ; Huang, SL; Lee, CY; Chang, TW; Chuang, Woei-Jer. "Structural and Dynamic Differences of Rhodostomin, an RGD-containing Disintegrin, and its D51E mutant" Proteins: Struct., Funct., Genet. 43, 499-508 (2001).
Assembly members:
Rhodostomin, polymer, 76 residues, 8417 Da.
Natural source: Common Name: Snake Taxonomy ID: not available Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Calloslasma rhodostoma
Experimental source: Production method: recombinant technology Host organism: Pichia pastoris
Entity Sequences (FASTA):
Rhodostomin: EFHHHHHHGKECDCSSPENP
CCDAATCKLRPGAQCGEGLC
CEQCKFSRAGKICRIPRGDM
PDDRCTGQSADCPRYH
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 380 |
| 15N chemical shifts | 68 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Rhodostomin | 1 |
Entities:
Entity 1, Rhodostomin 76 residues - 8417 Da.
| 1 | GLU | PHE | HIS | HIS | HIS | HIS | HIS | HIS | GLY | LYS | ||||
| 2 | GLU | CYS | ASP | CYS | SER | SER | PRO | GLU | ASN | PRO | ||||
| 3 | CYS | CYS | ASP | ALA | ALA | THR | CYS | LYS | LEU | ARG | ||||
| 4 | PRO | GLY | ALA | GLN | CYS | GLY | GLU | GLY | LEU | CYS | ||||
| 5 | CYS | GLU | GLN | CYS | LYS | PHE | SER | ARG | ALA | GLY | ||||
| 6 | LYS | ILE | CYS | ARG | ILE | PRO | ARG | GLY | ASP | MET | ||||
| 7 | PRO | ASP | ASP | ARG | CYS | THR | GLY | GLN | SER | ALA | ||||
| 8 | ASP | CYS | PRO | ARG | TYR | HIS |
Samples:
sample_1: Rhodostomin 3.0 mM
sample_2: Rhodostomin, [U-98% 15N], 2.5 mM
condition: pH: 6.0; temperature: 300 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H DQF-COSY | not available | not available | not available |
| 2D 1H-1H TOCSY | not available | not available | not available |
| 2D 1H-1H NOESY | not available | not available | not available |
| 2D 1H-15N HSQC | not available | not available | not available |
| 3D 1H-1H-15N TOCSY | not available | not available | not available |
| 3D 1H-1H-15N NOESY | not available | not available | not available |
| 3D HNHA | not available | not available | not available |
Software:
xwinnmr v2.6 - processing
NMR spectrometers:
- Bruker Avance 600 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts