BMRB Entry 5303
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5303
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Title: Solution structure and backbone dynamics of beryllofluoride-activated NTRC receiver domain PubMed: 12885241
Deposition date: 2002-02-25 Original release date: 2003-08-27
Authors: Hastings, C.; Lee, S.-Y.; Cho, H.; Yan, D.; Kustu, S.; Wemmer, D.
Citation: Hastings, C.; Lee, S-Y.; Cho, H.; Yan, D.; Kustu, S.; Wemmer, D.. "High-resolution Solution Structure of the Beryllofluoride-activated NtrC Receiver Domain " Biochemistry 42, 9081-9090 (2003).
Assembly members:
nitrogen regulation protein NR(I), polymer, 124 residues, Formula weight is not available
Natural source: Common Name: Salmonella typhimurium Taxonomy ID: 602 Superkingdom: Bacteria Kingdom: not available Genus/species: Salmonella typhimurium
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
nitrogen regulation protein NR(I): MQRGIVWVVDDDSSIRWVLE
RALAGAGLTCTTFENGNEVL
AALASKTPDVLLSDIRMPGM
DGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFD
YLPKPFDIDEAVALVERAIS
HYQE
- assigned_chemical_shifts
- coupling_constants
| Data type | Count |
| 1H chemical shifts | 804 |
| 13C chemical shifts | 371 |
| 15N chemical shifts | 117 |
| coupling constants | 76 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | nitrogen regulation protein NR(I) | 1 |
Entities:
Entity 1, nitrogen regulation protein NR(I) 124 residues - Formula weight is not available
| 1 | MET | GLN | ARG | GLY | ILE | VAL | TRP | VAL | VAL | ASP | ||||
| 2 | ASP | ASP | SER | SER | ILE | ARG | TRP | VAL | LEU | GLU | ||||
| 3 | ARG | ALA | LEU | ALA | GLY | ALA | GLY | LEU | THR | CYS | ||||
| 4 | THR | THR | PHE | GLU | ASN | GLY | ASN | GLU | VAL | LEU | ||||
| 5 | ALA | ALA | LEU | ALA | SER | LYS | THR | PRO | ASP | VAL | ||||
| 6 | LEU | LEU | SER | ASP | ILE | ARG | MET | PRO | GLY | MET | ||||
| 7 | ASP | GLY | LEU | ALA | LEU | LEU | LYS | GLN | ILE | LYS | ||||
| 8 | GLN | ARG | HIS | PRO | MET | LEU | PRO | VAL | ILE | ILE | ||||
| 9 | MET | THR | ALA | HIS | SER | ASP | LEU | ASP | ALA | ALA | ||||
| 10 | VAL | SER | ALA | TYR | GLN | GLN | GLY | ALA | PHE | ASP | ||||
| 11 | TYR | LEU | PRO | LYS | PRO | PHE | ASP | ILE | ASP | GLU | ||||
| 12 | ALA | VAL | ALA | LEU | VAL | GLU | ARG | ALA | ILE | SER | ||||
| 13 | HIS | TYR | GLN | GLU |
Samples:
sample_1: nitrogen regulation protein NR(I), [U-15N], 1.1 – 1.5 mM; sodium phosphate buffer 50 mM; NaCl 50 mM; BeCl2 4.4 mM; MgCl2 7.2 mM; NaF 29 mM; H2O 95%; D2O 5%
sample_2: nitrogen regulation protein NR(I), [U-13C; U-15N], 1.1 – 1.5 mM; sodium phosphate buffer 50 mM; NaCl 50 mM; BeCl2 4.4 mM; MgCl2 7.2 mM; NaF 29 mM; H2O 95%; D2O 5%
sample_3: nitrogen regulation protein NR(I), [U-10% 13C], 1.1 – 1.5 mM; sodium phosphate buffer 50 mM; NaCl 50 mM; BeCl2 4.4 mM; MgCl2 7.2 mM; NaF 29 mM; H2O 95%; D2O 5%
sample_4: nitrogen regulation protein NR(I), [U-15N], 1.1 – 1.5 mM; sodium phosphate buffer 50 mM; NaCl 50 mM; BeCl2 4.4 mM; MgCl2 7.2 mM; NaF 29 mM; H2O 95%; D2O 5%; phage pf1 30 mg/mL
sample_cond_1: pH: 6.75; temperature: 303 K; ionic strength: 140 mM; pressure: 1 atm
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 15N-separated NOESY | not available | not available | not available |
| 4D 13C/15N-separated NOESY | not available | not available | not available |
| 4D 13C-separated NOESY | not available | not available | not available |
| 3D 13C-separated NOESY | not available | not available | not available |
| HNCA-J | not available | not available | not available |
| CBCA(CO)NH | not available | not available | not available |
| 13C,1H-HSQC | not available | not available | not available |
| IPAP-HSQC | not available | not available | not available |
| HNHA | not available | not available | not available |
Software:
DYANA v1.5 - structure solution
X-PLOR vCNS 1.0 - structure solution
FELIX - processing
NMRVIEW - data analysis
NMR spectrometers:
- Bruker DRX 500 MHz
Related Database Links:
| BMRB | 4527 4528 4762 4763 4764 |
| PDB | |
| DBJ | BAB38213 BAE77441 BAG79675 BAI27885 BAI33008 |
| EMBL | CAA28808 CAA59425 CAD03095 CAP78325 CAQ34219 |
| GB | AAB03002 AAC76865 AAG59057 AAL22844 AAN45373 |
| PIR | AC0950 E86074 |
| REF | NP_290493 NP_312817 NP_418304 NP_458044 NP_462885 |
| SP | P0AFB8 P0AFB9 P41789 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts