BMRB Entry 5491
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5491
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Title: Structural basis for new pattern of the conserved amino acid residues related to chitin-binding in the antifungal peptide from the coconut rhinoceros beetle, Oryctes rhinoceros PubMed: 12676931
Deposition date: 2002-08-05 Original release date: 2003-06-24
Authors: Hemmi, Hikaru; Ishibashi, Jun; Tomie, Tetsuya; Yamakawa, Minoru
Citation: Hemmi, Hikaru; Ishibashi, Jun; Tomie, Tetsuya; Yamakawa, Minoru. "Structural basis for new pattern of the conserved amino acid residues related to chitin-binding in the antifungal peptide from the coconut rhinoceros beetle, Oryctes rhinoceros" J. Biol. Chem. 278, 22820-22827 (2003).
Assembly members:
scarabaecin, polymer, 36 residues, Formula weight is not available
Natural source: Common Name: rhinoceros beetle Taxonomy ID: 72550 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Oryctes rhinoceros
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
scarabaecin: ELPKLPDDKVLIRSRSNCPK
GKVWNGFDCKSPFAFS
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 36 |
| 1H chemical shifts | 274 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | scarabaecin monomer | 1 |
Entities:
Entity 1, scarabaecin monomer 36 residues - Formula weight is not available
| 1 | GLU | LEU | PRO | LYS | LEU | PRO | ASP | ASP | LYS | VAL | ||||
| 2 | LEU | ILE | ARG | SER | ARG | SER | ASN | CYS | PRO | LYS | ||||
| 3 | GLY | LYS | VAL | TRP | ASN | GLY | PHE | ASP | CYS | LYS | ||||
| 4 | SER | PRO | PHE | ALA | PHE | SER |
Samples:
sample_1: scarabaecin 3 mM
Ex-cond_1: pH: 2.4; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H-1H TOCSY | sample_1 | not available | Ex-cond_1 |
| 1H-1H DQF-COSY | sample_1 | not available | Ex-cond_1 |
| 1H-1H NOESY | sample_1 | not available | Ex-cond_1 |
| 1H-1H E.COSY | sample_1 | not available | Ex-cond_1 |
| 1H-1H ROESY | sample_1 | not available | Ex-cond_1 |
Software:
XWINNMR v2.6 - acquisition, processing
FELIX v2000 - processing
SPARKY v3.1 - peak assignment
NMR spectrometers:
- Bruker Avance 800 MHz
- Bruker Avance 500 MHz