BMRB Entry 5927
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5927
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Title: NMR Structure of a Cyclic Polyamide-DNA Complex PubMed: 15212545
Deposition date: 2003-08-29 Original release date: 2010-07-16
Authors: Zhang, Q.; Dwyer, T.; Tsui, V.; Case, D.; Cho, J.; Dervan, P.; Wemmer, D.
Citation: Zhang, Q.; Dwyer, T.; Tsui, V.; Case, D.; Cho, J.; Dervan, P.; Wemmer, D.. "NMR Structure of a Cyclic Polyamide-DNA Complex" J. Am. Chem. Soc. 126, 7958-7966 (2004).
Assembly members:
TGTTA, polymer, 11 residues, Formula weight is not available
TAACA, polymer, 11 residues, Formula weight is not available
CYE, non-polymer, 948.021 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
TGTTA: GCCTGTTAGCG
TAACA: CGCTAACAGGC
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 189 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | strand 1 | 1 |
| 2 | strand 2 | 2 |
| 3 | Cyclic Polyamide | 3 |
Entities:
Entity 1, strand 1 11 residues - Formula weight is not available
| 1 | DG | DC | DC | DT | DG | DT | DT | DA | DG | DC | ||||
| 2 | DG |
Entity 2, strand 2 11 residues - Formula weight is not available
| 1 | DC | DG | DC | DT | DA | DA | DC | DA | DG | DG | ||||
| 2 | DC |
Entity 3, Cyclic Polyamide - C45 H55 N16 O8 - 948.021 Da.
| 1 | CYE |
Samples:
sample_1: TGTTA1 – 2.5 mM; TAACA1 – 2.5 mM; EDTA 0.1 mM; sodium phosphate 10 mM
sample_cond_1: pH: 7.0; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H-13C HSQC | sample_1 | not available | sample_cond_1 |
| NOESY | sample_1 | not available | sample_cond_1 |
Software:
FELIX v2.3 -
NMR spectrometers:
- Bruker AMX 600 MHz
- GE . 500 MHz