BMRB Entry 6152
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6152
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Title: Solution structure of TIP-B1
Deposition date: 2004-03-19 Original release date: 2004-05-15
Authors: Xu, Chao; Tang, Yajun; Xu, Yingqi; Wu, Jihui; Shi, Yunyu; Zhang, Qinghua; Zheng, Peicheng; Du, Yanzhi
Citation: Xu, C.; Tang, Y.; Xu, Y.; Wu, J.; Shi, Y.; Zhang, Q.; Zheng, P.; Du, Y.. "Solution structure of recombinant TIP-B1, a novel TNF inhibitory protein" The BMRB entry is the only known published source for the data..
Assembly members:
TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3, polymer, 101 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3: MSGLRVYSTSVTGSREIKSQ
QSEVTRILDGKRIQYQLVDI
SQDNALRDEMRALAGNPKAT
PPQIVNGDQYCGDYELFVEA
VEQNTLQEFLKLALEHHHHH
H
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 612 |
| 13C chemical shifts | 392 |
| 15N chemical shifts | 101 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | TIP, momomer | 1 |
Entities:
Entity 1, TIP, momomer 101 residues - Formula weight is not available
| 1 | MET | SER | GLY | LEU | ARG | VAL | TYR | SER | THR | SER | ||||
| 2 | VAL | THR | GLY | SER | ARG | GLU | ILE | LYS | SER | GLN | ||||
| 3 | GLN | SER | GLU | VAL | THR | ARG | ILE | LEU | ASP | GLY | ||||
| 4 | LYS | ARG | ILE | GLN | TYR | GLN | LEU | VAL | ASP | ILE | ||||
| 5 | SER | GLN | ASP | ASN | ALA | LEU | ARG | ASP | GLU | MET | ||||
| 6 | ARG | ALA | LEU | ALA | GLY | ASN | PRO | LYS | ALA | THR | ||||
| 7 | PRO | PRO | GLN | ILE | VAL | ASN | GLY | ASP | GLN | TYR | ||||
| 8 | CYS | GLY | ASP | TYR | GLU | LEU | PHE | VAL | GLU | ALA | ||||
| 9 | VAL | GLU | GLN | ASN | THR | LEU | GLN | GLU | PHE | LEU | ||||
| 10 | LYS | LEU | ALA | LEU | GLU | HIS | HIS | HIS | HIS | HIS | ||||
| 11 | HIS |
Samples:
sample_1: TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3, [U-95% 13C; U-90% 15N], 2 mM; phosphate buffer 20 mM; NaCl 100 mM; H2O 90%; D2O 10%
sample_cond_1: pH: 7.0; temperature: 295 K; ionic strength: 120 mM; pressure: 1 atm
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
| 3D HCCH COSY | sample_1 | not available | sample_cond_1 |
| 3D 13C-separated NOESY | sample_1 | not available | sample_cond_1 |
| 3D 15N-separated NOESY | sample_1 | not available | sample_cond_1 |
| 3D CBCA(CO)NH | sample_1 | not available | sample_cond_1 |
| 3D CBCANH | sample_1 | not available | sample_cond_1 |
| 3D HNCO | sample_1 | not available | sample_cond_1 |
| 3D H(CCO)NH TOCSY | sample_1 | not available | sample_cond_1 |
| 3D C(CO)NH TOCSY | sample_1 | not available | sample_cond_1 |
| 3D HCCH TOCSY | sample_1 | not available | sample_cond_1 |
Software:
NMRPipe v2.2 - processing
CNS v1.1 - structure solution, refinement
sparky vSPARKY3 - data analysis
NMR spectrometers:
- Bruker DMX 600 MHz
Related Database Links:
| PDB | |
| DBJ | BAE88615 |
| EMBL | CAC35770 CAH90649 |
| GB | AAG41412 AAH30135 AAI02049 AAI67002 AAL95695 |
| REF | NP_001029935 NP_001100158 NP_001125350 NP_001229384 NP_112576 |
| SP | Q3ZCL8 Q5RC61 Q9H299 |
| TPG | DAA32143 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts