BMRB Entry 6742

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6742

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: De-ubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain PubMed: 16118278

Deposition date: 2005-07-21 Original release date: 2005-09-08

Authors: Mao, Yuxin; Hodsdon, Michael; De Camilli, Pietro

Citation: Mao, Yuxin; Senic-Matuglia, Francesca; Di Fiore, Pier; Polo, Simona; Hodsdon, Michael; De Camilli, Pietro. "Deubiquitinating function of ataxin-3: Insights from the solution structure of the Josephin domain." Proc. Natl. Acad. Sci. U. S. A. 102, 12700-12705 (2005).

Assembly members:
ataxin-3 josephin domain, polymer, 190 residues, Formula weight is not available

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):
ataxin-3 josephin domain: MPLGSMESIFHEKQEGSLCA QHCLNNLLQGEYFSPVELSS IAHQLDEEERMRMAEGGVTS EDYRTFLQQPSGNMDDSGFF SIQVISNALKVWGLELILFN SPEYQRLRIDPINERSFICN YKEHWFTVRKLGKQWFNLNS LLTGPELISDTYLALFLAQL QQEGYSIFVVKGDLPDCEAD QLLQMIRVQQ

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	750
15N chemical shifts	199
1H chemical shifts	1283

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ataxin-3 josephin domain	1

Entities:

Entity 1, ataxin-3 josephin domain 190 residues - Formula weight is not available

1	MET	PRO	LEU	GLY	SER	MET	GLU	SER	ILE	PHE
2	HIS	GLU	LYS	GLN	GLU	GLY	SER	LEU	CYS	ALA
3	GLN	HIS	CYS	LEU	ASN	ASN	LEU	LEU	GLN	GLY
4	GLU	TYR	PHE	SER	PRO	VAL	GLU	LEU	SER	SER
5	ILE	ALA	HIS	GLN	LEU	ASP	GLU	GLU	GLU	ARG
6	MET	ARG	MET	ALA	GLU	GLY	GLY	VAL	THR	SER
7	GLU	ASP	TYR	ARG	THR	PHE	LEU	GLN	GLN	PRO
8	SER	GLY	ASN	MET	ASP	ASP	SER	GLY	PHE	PHE
9	SER	ILE	GLN	VAL	ILE	SER	ASN	ALA	LEU	LYS
10	VAL	TRP	GLY	LEU	GLU	LEU	ILE	LEU	PHE	ASN
11	SER	PRO	GLU	TYR	GLN	ARG	LEU	ARG	ILE	ASP
12	PRO	ILE	ASN	GLU	ARG	SER	PHE	ILE	CYS	ASN
13	TYR	LYS	GLU	HIS	TRP	PHE	THR	VAL	ARG	LYS
14	LEU	GLY	LYS	GLN	TRP	PHE	ASN	LEU	ASN	SER
15	LEU	LEU	THR	GLY	PRO	GLU	LEU	ILE	SER	ASP
16	THR	TYR	LEU	ALA	LEU	PHE	LEU	ALA	GLN	LEU
17	GLN	GLN	GLU	GLY	TYR	SER	ILE	PHE	VAL	VAL
18	LYS	GLY	ASP	LEU	PRO	ASP	CYS	GLU	ALA	ASP
19	GLN	LEU	LEU	GLN	MET	ILE	ARG	VAL	GLN	GLN

Samples:

sample_1: ataxin-3 josephin domain, [U-100% 13C; U-100% 15N], 1.5 mM; potassium phospate buffer 20 mM

conditions_1: pH: 6.4; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D-HNCO	sample_1	not available	conditions_1
HNCA	not available	not available	not available
HNCACB	not available	not available	not available
HN(CO)CA	not available	not available	not available
HCACO	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
(HCA)CO(CA)NH	not available	not available	not available
CC(CO)NH	not available	not available	not available
HCC(CO)NH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian Inova 600 MHz

BMRB	17333 6241
PDB	1YZB 2AGA 2DOS 2JRI
DBJ	BAB18798 BAB25825 BAB55645 BAB55646 BAC27155
EMBL	CAA72986
GB	AAB33571 AAB63352 AAB63353 AAB63354 AAH33711
REF	NP_001092686 NP_001116553 NP_001124408 NP_001158250 NP_001161386
SP	O35815 P54252 Q9CVD2
TPG	DAA17354

Biological Magnetic Resonance Data Bank