==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HNF-3 HOMOLOGUES 27-JAN-98 2HFH . COMPND 2 MOLECULE: GENESIS; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR I.MARSDEN,C.JIN,X.LIAO . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6901.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 55.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 32.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 157 0, 0.0 38,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 156.7 2.1 0.0 -1.2 2 2 A V - 0 0 77 1,-0.2 38,-0.0 36,-0.1 0, 0.0 -0.011 360.0-147.1 86.0 -27.6 5.3 -2.0 -2.0 3 3 A K - 0 0 189 1,-0.1 -1,-0.2 36,-0.0 0, 0.0 0.784 28.0-167.6 26.2 60.6 3.4 -5.1 -0.7 4 4 A P - 0 0 36 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.385 22.0-100.7 -75.0 153.4 6.8 -6.4 0.5 5 5 A P - 0 0 90 0, 0.0 2,-1.1 0, 0.0 -2,-0.0 -0.488 26.6-127.1 -74.9 142.9 7.3 -10.0 1.7 6 6 A Y + 0 0 171 -2,-0.2 2,-0.4 4,-0.0 4,-0.0 -0.778 56.5 134.0 -95.2 92.2 7.4 -10.6 5.5 7 7 A S > + 0 0 38 -2,-1.1 4,-1.0 1,-0.1 0, 0.0 -0.950 26.8 177.0-142.4 117.2 10.7 -12.6 6.0 8 8 A Y H >> S+ 0 0 54 -2,-0.4 4,-1.7 2,-0.2 3,-0.8 0.977 85.2 46.7 -81.5 -69.1 13.2 -11.8 8.7 9 9 A I H 3> S+ 0 0 102 1,-0.3 4,-2.3 2,-0.2 3,-0.3 0.814 119.0 46.4 -38.6 -43.2 15.9 -14.5 8.2 10 10 A A H 3> S+ 0 0 39 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.874 103.5 61.2 -68.4 -40.4 15.7 -13.6 4.5 11 11 A L H X S+ 0 0 1 -4,-1.7 4,-2.9 -3,-0.3 3,-0.5 0.904 104.2 62.8 -82.1 -47.6 19.2 -10.7 6.9 13 13 A T H 3X S+ 0 0 69 -4,-2.3 4,-1.7 1,-0.3 -2,-0.2 0.813 112.8 39.6 -45.0 -38.0 20.4 -13.0 4.2 14 14 A M H 3X S+ 0 0 23 -4,-2.0 4,-0.8 2,-0.2 -1,-0.3 0.736 113.5 54.4 -83.2 -26.9 20.1 -10.0 1.9 15 15 A A H << S+ 0 0 1 -4,-0.6 -2,-0.2 -3,-0.5 -1,-0.2 0.713 111.3 46.6 -77.0 -23.6 21.6 -7.7 4.7 16 16 A I H >< S+ 0 0 28 -4,-2.9 3,-2.6 1,-0.2 -2,-0.2 0.916 105.2 55.9 -82.2 -49.8 24.6 -10.1 4.9 17 17 A L H 3< S+ 0 0 126 -4,-1.7 -2,-0.2 1,-0.3 -1,-0.2 0.752 84.8 87.7 -52.7 -27.3 25.3 -10.4 1.2 18 18 A Q T 3< S+ 0 0 93 -4,-0.8 -1,-0.3 1,-0.1 -2,-0.2 0.772 84.0 62.5 -41.5 -33.7 25.5 -6.5 1.3 19 19 A S < - 0 0 17 -3,-2.6 -1,-0.1 1,-0.1 5,-0.1 -0.901 67.8-167.6-102.1 112.0 29.1 -7.2 2.1 20 20 A P S S+ 0 0 119 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.384 89.6 29.4 -75.0 0.9 31.0 -9.0 -0.7 21 21 A Q S S- 0 0 143 2,-0.2 -2,-0.1 -4,-0.0 3,-0.1 0.590 123.0 -73.6-120.4 -84.8 33.8 -9.7 1.8 22 22 A K S S+ 0 0 58 1,-0.1 2,-0.4 56,-0.1 57,-0.1 0.078 90.7 104.0-179.4 42.7 32.9 -10.0 5.5 23 23 A K - 0 0 109 -7,-0.2 2,-0.4 55,-0.1 55,-0.2 -0.946 39.5-177.7-140.7 114.5 32.0 -6.5 6.8 24 24 A L B -A 77 0A 6 53,-1.8 53,-3.5 -2,-0.4 2,-0.7 -0.960 13.4-154.3-116.0 130.6 28.4 -5.4 7.5 25 25 A T >> - 0 0 51 -2,-0.4 4,-1.9 51,-0.2 3,-1.6 -0.910 7.0-154.8-106.8 104.5 27.6 -1.8 8.7 26 26 A L H 3> S+ 0 0 20 -2,-0.7 4,-2.8 1,-0.3 5,-0.2 0.782 101.0 56.0 -43.3 -34.2 24.3 -1.8 10.6 27 27 A S H 3> S+ 0 0 59 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.882 109.5 42.8 -66.6 -41.7 24.2 1.9 9.5 28 28 A G H <> S+ 0 0 17 -3,-1.6 4,-0.7 2,-0.2 -2,-0.2 0.636 114.2 55.2 -77.1 -17.0 24.6 0.9 5.8 29 29 A I H X S+ 0 0 5 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.938 103.9 49.8 -79.3 -52.8 22.0 -1.9 6.5 30 30 A C H X S+ 0 0 42 -4,-2.8 4,-1.8 1,-0.3 -2,-0.2 0.881 116.7 43.4 -51.8 -45.2 19.2 0.3 7.9 31 31 A E H X S+ 0 0 138 -4,-1.4 4,-0.7 1,-0.2 -1,-0.3 0.776 111.4 55.7 -70.8 -29.1 19.7 2.6 4.8 32 32 A F H < S+ 0 0 16 -4,-0.7 4,-0.4 2,-0.2 -2,-0.2 0.826 106.1 51.9 -70.8 -34.6 19.9 -0.5 2.7 33 33 A I H >X S+ 0 0 8 -4,-2.5 3,-3.3 1,-0.2 4,-1.0 0.981 106.8 48.9 -64.6 -61.2 16.5 -1.7 4.0 34 34 A S H 3< S+ 0 0 44 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.704 97.9 75.5 -50.7 -22.5 14.6 1.5 3.3 35 35 A N T 3< S+ 0 0 127 -4,-0.7 -1,-0.3 1,-0.2 -2,-0.2 0.807 122.7 6.0 -59.3 -32.8 16.2 1.1 -0.1 36 36 A R T <4 S+ 0 0 133 -3,-3.3 -2,-0.3 -4,-0.4 -1,-0.2 0.124 131.4 62.8-134.9 14.5 13.7 -1.6 -0.8 37 37 A F X + 0 0 11 -4,-1.0 4,-2.5 1,-0.1 5,-0.3 -0.452 54.5 134.7-140.5 61.1 11.5 -1.2 2.4 38 38 A P H > S+ 0 0 52 0, 0.0 4,-3.2 0, 0.0 5,-0.1 0.939 81.2 38.2 -74.9 -53.6 10.0 2.3 2.2 39 39 A Y H 4 S+ 0 0 104 2,-0.2 -37,-0.1 3,-0.2 -2,-0.1 0.702 120.6 50.9 -71.4 -19.4 6.5 1.5 3.2 40 40 A Y H > S+ 0 0 11 3,-0.2 4,-3.6 2,-0.2 3,-0.3 0.950 121.1 29.1 -80.9 -53.2 7.9 -1.0 5.6 41 41 A R H < S+ 0 0 99 -4,-2.5 -2,-0.2 2,-0.3 7,-0.1 0.878 120.2 54.7 -72.1 -41.2 10.4 1.3 7.4 42 42 A E T < S+ 0 0 135 -4,-3.2 -1,-0.2 -5,-0.3 -3,-0.2 0.588 121.9 33.0 -66.6 -11.6 8.3 4.4 6.7 43 43 A K T 4 S+ 0 0 146 -3,-0.3 -2,-0.3 -5,-0.1 -1,-0.2 0.701 136.8 22.3-111.2 -36.7 5.5 2.3 8.5 44 44 A F >< + 0 0 93 -4,-3.6 3,-1.1 1,-0.1 -2,-0.2 -0.542 67.7 146.9-132.8 64.9 7.6 0.3 11.0 45 45 A P G > + 0 0 56 0, 0.0 3,-0.8 0, 0.0 -4,-0.1 0.536 69.8 68.5 -75.0 -10.6 10.8 2.3 11.5 46 46 A A G > S+ 0 0 80 1,-0.2 3,-0.9 2,-0.1 4,-0.5 0.651 85.2 68.4 -81.1 -18.8 10.8 1.2 15.1 47 47 A W G <> + 0 0 4 -3,-1.1 4,-2.5 1,-0.2 5,-0.3 0.460 69.4 100.6 -77.2 -3.0 11.6 -2.4 13.9 48 48 A Q H <> S+ 0 0 99 -3,-0.8 4,-0.8 1,-0.3 -1,-0.2 0.842 91.9 35.4 -48.6 -40.6 15.0 -1.0 12.8 49 49 A N H <> S+ 0 0 60 -3,-0.9 4,-2.3 2,-0.2 -1,-0.3 0.840 107.5 67.0 -81.7 -38.1 16.3 -2.6 16.0 50 50 A S H > S+ 0 0 32 -4,-0.5 4,-1.4 1,-0.3 -2,-0.2 0.866 103.6 46.9 -48.0 -44.8 14.0 -5.6 15.8 51 51 A I H X S+ 0 0 6 -4,-2.5 4,-2.5 1,-0.2 -1,-0.3 0.883 107.5 56.3 -64.9 -41.9 15.8 -6.7 12.6 52 52 A R H X S+ 0 0 92 -4,-0.8 4,-2.3 -5,-0.3 5,-0.3 0.861 102.3 57.2 -56.8 -40.3 19.2 -6.1 14.4 53 53 A H H X S+ 0 0 132 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.918 116.9 33.0 -56.1 -49.7 18.0 -8.6 17.1 54 54 A N H X S+ 0 0 51 -4,-1.4 4,-1.0 2,-0.2 -1,-0.2 0.689 110.4 70.2 -78.8 -21.7 17.5 -11.3 14.5 55 55 A L H X>S+ 0 0 2 -4,-2.5 4,-1.1 2,-0.2 5,-0.6 0.940 113.4 25.8 -59.0 -53.0 20.5 -9.9 12.5 56 56 A S H <5S+ 0 0 58 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.687 121.7 57.7 -82.8 -22.2 23.0 -11.0 15.1 57 57 A L H <5S+ 0 0 122 -4,-1.1 -2,-0.2 -5,-0.3 -1,-0.2 0.531 108.3 50.9 -82.6 -9.3 20.6 -13.8 16.2 58 58 A N H <5S+ 0 0 45 -4,-1.0 -2,-0.2 -3,-0.3 -3,-0.2 0.916 131.5 3.1 -88.6 -82.1 20.7 -15.1 12.6 59 59 A D T <5S- 0 0 10 -4,-1.1 24,-0.2 -5,-0.1 -3,-0.2 0.952 89.8-135.4 -71.2 -53.3 24.3 -15.5 11.4 60 60 A C < + 0 0 67 -5,-0.6 20,-0.5 -6,-0.1 -4,-0.1 0.860 39.4 166.5 95.8 49.6 25.9 -14.5 14.8 61 61 A F - 0 0 13 -6,-0.2 2,-0.5 18,-0.2 18,-0.3 -0.086 38.2-101.0 -82.9-173.5 28.6 -12.1 13.6 62 62 A V B -B 78 0B 84 16,-2.4 16,-1.6 14,-0.1 2,-0.3 -0.978 29.8-156.1-118.3 124.7 30.7 -9.7 15.7 63 63 A K - 0 0 82 -2,-0.5 14,-0.1 14,-0.2 -38,-0.1 -0.746 12.3-136.2 -99.2 147.2 29.8 -6.0 15.9 64 64 A I > - 0 0 33 -2,-0.3 2,-1.3 3,-0.0 3,-0.6 -0.890 12.9-154.0-106.8 99.8 32.4 -3.3 16.8 65 65 A P T 3 S- 0 0 97 0, 0.0 10,-0.1 0, 0.0 -2,-0.0 -0.628 79.2 -27.3 -75.0 91.5 30.8 -0.8 19.2 66 66 A R T 3 S- 0 0 222 -2,-1.3 9,-0.1 8,-0.2 0, 0.0 0.998 83.3-147.9 63.4 71.7 32.8 2.4 18.5 67 67 A E X - 0 0 97 -3,-0.6 2,-2.2 1,-0.1 3,-0.8 -0.526 18.0-117.0 -73.3 137.6 36.1 0.7 17.4 68 68 A P T 3 S+ 0 0 124 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.511 106.1 44.6 -75.0 71.9 39.3 2.7 18.3 69 69 A G T 3 S+ 0 0 73 -2,-2.2 -3,-0.0 1,-0.6 3,-0.0 0.132 90.8 83.4-175.6 -41.7 40.3 3.3 14.7 70 70 A N S < S- 0 0 54 -3,-0.8 -1,-0.6 1,-0.1 5,-0.0 -0.377 73.8-128.6 -78.8 160.7 37.2 4.4 12.7 71 71 A P - 0 0 110 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.889 60.2 -86.3 -75.0 -45.3 36.0 8.0 12.6 72 72 A G S S+ 0 0 65 2,-0.0 3,-0.1 3,-0.0 0, 0.0 0.513 86.8 116.5 132.4 71.2 32.4 7.2 13.5 73 73 A K S S- 0 0 182 1,-0.4 2,-0.2 0, 0.0 -48,-0.0 0.674 79.5 -32.2-121.6 -60.6 30.1 6.3 10.5 74 74 A G - 0 0 25 -47,-0.1 -1,-0.4 -48,-0.1 2,-0.2 -0.438 66.8 -89.8-139.9-148.9 28.9 2.7 10.9 75 75 A N - 0 0 30 -2,-0.2 2,-0.4 -3,-0.1 -47,-0.1 -0.751 21.0-124.0-130.5 175.7 30.2 -0.7 12.3 76 76 A Y - 0 0 95 -2,-0.2 2,-0.3 -12,-0.1 -51,-0.2 -0.703 27.9-171.4-126.7 78.9 32.1 -3.7 11.0 77 77 A W B -A 24 0A 5 -53,-3.5 -53,-1.8 -2,-0.4 2,-0.4 -0.567 6.7-169.8 -72.2 128.3 30.0 -6.8 11.5 78 78 A T B -B 62 0B 46 -16,-1.6 -16,-2.4 -2,-0.3 2,-0.3 -0.979 23.9-117.9-124.2 135.3 32.0 -10.0 10.7 79 79 A L - 0 0 13 -2,-0.4 -18,-0.2 -18,-0.3 -19,-0.1 -0.544 32.2-124.3 -71.6 131.4 30.6 -13.5 10.5 80 80 A D > - 0 0 56 -20,-0.5 2,-2.4 -2,-0.3 3,-0.7 -0.543 19.3-115.9 -78.0 143.3 32.1 -15.9 13.1 81 81 A P T 3 S+ 0 0 110 0, 0.0 -1,-0.1 0, 0.0 -20,-0.0 -0.362 98.0 82.4 -75.0 56.2 33.8 -19.1 11.9 82 82 A Q T 3 S+ 0 0 159 -2,-2.4 -22,-0.1 -22,-0.1 -3,-0.0 0.664 97.4 22.9-122.8 -54.8 31.1 -21.2 13.7 83 83 A S < + 0 0 44 -3,-0.7 -23,-0.1 -24,-0.2 -24,-0.0 0.979 60.9 157.4 -79.5 -71.0 28.1 -21.4 11.4 84 84 A E > + 0 0 126 -4,-0.5 4,-0.5 1,-0.1 -1,-0.1 0.665 44.3 114.1 51.3 18.0 29.5 -20.7 7.9 85 85 A D H > S+ 0 0 102 2,-0.2 4,-0.5 1,-0.1 3,-0.4 0.865 74.5 42.8 -83.4 -42.0 26.3 -22.6 6.8 86 86 A M H 4 S+ 0 0 106 1,-0.2 3,-0.3 2,-0.2 4,-0.1 0.763 101.0 72.7 -73.4 -28.0 24.6 -19.6 5.2 87 87 A F H 4 S- 0 0 109 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.861 134.4 -24.6 -52.6 -41.6 28.0 -18.7 3.6 88 88 A D H < S+ 0 0 92 -4,-0.5 -1,-0.2 -3,-0.4 -2,-0.2 -0.217 72.4 161.2-173.5 68.3 27.5 -21.7 1.3 89 89 A N S < S+ 0 0 100 -4,-0.5 -3,-0.1 -3,-0.3 -2,-0.1 0.921 91.1 24.1 -60.4 -48.6 25.3 -24.4 2.7 90 90 A G S S- 0 0 51 -4,-0.1 -1,-0.1 -5,-0.1 -2,-0.1 0.973 119.4 -97.9 -80.0 -64.7 24.7 -25.9 -0.8 91 91 A S S S- 0 0 59 -4,-0.1 -2,-0.0 2,-0.0 0, 0.0 -0.076 81.6 -30.6 176.0 -57.0 27.9 -24.7 -2.6 92 92 A F 0 0 177 0, 0.0 -4,-0.1 0, 0.0 -5,-0.0 0.011 360.0 360.0 179.0 53.5 27.2 -21.5 -4.7 93 93 A L 0 0 185 0, 0.0 -3,-0.1 0, 0.0 -2,-0.0 -0.596 360.0 360.0 -72.4 360.0 23.6 -21.4 -5.9